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%ModuleCode
#include <list>
#include <BALL/KERNEL/extractors.h>
using std::list;
%End
list<Atom*> atoms(const AtomContainer&, const String& expression = String());
list<PDBAtom*> PDBAtoms(const AtomContainer&, const String& expression = String());
list<Bond*> bonds(const AtomContainer&, bool selected_only = false);
list<Bond*> bonds(const Atom&);
list<AtomContainer*> atomContainers(const AtomContainer&, bool selected_only = false);
list<Fragment*> fragments(const AtomContainer&, bool selected_only = false);
list<Molecule*> molecules(const AtomContainer&, bool selected_only = false);
list<Residue*> residues(const AtomContainer&, bool selected_only = false);
list<SecondaryStructure*> secondaryStructures(const AtomContainer&, bool selected_only = false);
list<Chain*> chains(const AtomContainer&, bool selected_only = false);
list<Protein*> proteins(const AtomContainer&, bool selected_only = false);
list<Nucleotide*> nucleotides(const AtomContainer&, bool selected_only = false);
list<NucleicAcid*> nucleicAcids(const AtomContainer&, bool selected_only = false);
// this is the most useful class in the whole of BALL: it is here to get around some %$&%$/ sip bugs!
class BALLCoreSipExtractors
{
%TypeHeaderCode
#include <BALL/KERNEL/extractors.h>
namespace BALL {
class BALLCoreSipExtractors
{
public:
};
}
%End
public:
list<Atom*> __atoms();
%MethodCode
// do nothing
%End
list<PDBAtom*> __PDBAtoms();
%MethodCode
// do nothing
%End
list<Bond*> __bonds();
%MethodCode
// do nothing
%End
list<AtomContainer*> __atomContainers();
%MethodCode
// do nothing
%End
list<Fragment*> __fragments();
%MethodCode
// do nothing
%End
list<Molecule*> __molecules();
%MethodCode
// do nothing
%End
list<Residue*> __residues();
%MethodCode
// do nothing
%End
list<SecondaryStructure*> __secondaryStructures();
%MethodCode
// do nothing
%End
list<Chain*> __chains();
%MethodCode
// do nothing
%End
list<Protein*> __proteins();
%MethodCode
// do nothing
%End
list<Nucleotide*> __nucleotides();
%MethodCode
// do nothing
%End
list<NucleicAcid*> __nucleicAcids();
%MethodCode
// do nothing
%End
};
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