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class NucleotideMapping
{
%TypeHeaderCode
#include <BALL/STRUCTURE/nucleotideMapping.h>
%End
public:
typedef std::pair<const std::string, const std::string> Alignment;
NucleotideMapping();
static NucleotideMapping assignNaively(Chain& a, Chain& b, unsigned int offset_a = 0, unsigned int offset_b = 0);
static NucleotideMapping assignFromDistances(Chain& a, Chain& b);
Chain* getFirstStrand() const;
Chain* getSecondStrand() const;
Residue* firstToSecond(Residue* a) const;
Residue* secondToFirst(Residue* b) const;
};
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