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#!/bin/sh
MANDIR=debian/man
mkdir -p $MANDIR
VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1`
PROGNAME=`grep "^Package:" debian/control | sed 's/^Package: *//' | head -n1`
AUTHOR=".SH AUTHOR\n \
This manpage was written by $DEBFULLNAME for the Debian distribution and\n \
can be used for any other usage of the program.\
"
# If program name is different from package name or title should be
# different from package short description change this here
progname=bamcleanheader.py
help2man --no-info --no-discard-stderr --help-option=" --help" \
--name="remove illegal and malformed fields from a BAM file's header" \
--version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=bamfilterrg.py
help2man --no-info --no-discard-stderr --help-option=" --help" \
--name="filter readgroup(s) from a BAM file" \
--version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=bamfixflags.py
help2man --no-info --no-discard-stderr --help-option=" --help" \
--name="filter readgroup(s) from a BAM file" \
--version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=bamgroupreads.py
help2man --no-info --no-discard-stderr --help-option=" --help" \
--name="Group BAM file by read IDs without sorting" \
--version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=bamheadrg.py
help2man --no-info --no-discard-stderr --help-option=" --help" \
--name="Inject readgroup info" \
--version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=bamlibs.py
help2man --no-info --no-discard-stderr --help-option=" --help" \
--name="output comma delimited string of read group IDs for each library" \
--version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=bamtofastq.py
help2man --no-info --no-discard-stderr --help-option=" --help" \
--name="Convert a coordinate sorted BAM file to FASTQ" \
--version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
echo "$MANDIR/*.1" > debian/manpages
cat <<EOT
Please enhance the help2man output.
The following web page might be helpful in doing so:
http://liw.fi/manpages/
EOT
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