File: test_query_paths.fasta

package info (click to toggle)
bandage 0.9.0-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, forky, sid, trixie
  • size: 15,684 kB
  • sloc: cpp: 45,359; sh: 491; makefile: 12
file content (14 lines) | stat: -rw-r--r-- 9,393 bytes parent folder | download | duplicates (3)
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>query1 perfect match from 1+ to 4+
CCAATGAAAAAGCTATGCACTTTGTACAGGGTGCCATCGGGTTTCTGAACTCTCAGATAGTGGGGATCCCGGGAAAGGGCCTATATTTGCGGTCCAACTTAGGCGTAAACCTCGATGCTACCTACTCAGACCCACCCCGCGCGGGGTAAATATGGCACTCATCCCAGCTGGTTCTTGGCGTTCTACGCAGCCACATGTTCATTAACAGTTGTCTGGTAGCACAAAAGTATTACCATGGTCCTAGAAGCCCGGCAGAGTTAGTTCGAACCTAATGCCACAAATGAGACAGGACGCCAATGGGTACCGGACATTAGGTCGAGCTCAGTTCGGTAACGGAGAGACCCTGCGGCGTACTTAATTATGCATATGAAACGCGCCCAAGTGACGCCAGGCAAGTCTCAGCAGGTTCCCGTGTTAGCTCGAGGGTAAACATACAAGCCGATTGAACATGGGTTGGGGGCTTCAAATCGTCGAGGACCCCACAGTACCTCGGAGACCAAGACTAGCCGCTGGTAAACACACCATGACCCCGGCTCTCCATTGATGCCACGGCGATTGTTGGAGAGCCAGCAGCGACTGCAAACATCAGATCAGAGTAATACTAGCATGCGATAAGTCCCTAACTGACTATGGCCTTCTGTAGAGTCAACTTCACCACATATGCTGTCTCTGGCACGTGGATGGTTTAGAGGAATCAGATTCAAGTCTGGTTAACCATCAAACAGGTCTTGAGTCTAAAATTGTCGTCTCCTGCGTACGAGATGGAAATACTAGGTAACTACAGGGACTCCGACGTTATGTACGTTGCTCCGTCAGAGGCGCCATTCAGGATCACGTTACCGCGAAAAAAAGGGACCAGGAGCTCTTCTCCCCTGCGGTCACGTCTATAGAAATTACACCATTAACCCTCCTGAGAACCGGGAGGCGGGAATCCGTCACGTATGAGAAGGTATTTGCCCGATAATCAATACCCCAGGCTTCTAACTTTTTCCACTCGCTT
>query2 same as query 1 but with 20 mismatches (2%)
CCAATGAAAAAGCTATGCACATTGTACAGGGTGCCATCGGCTTTCTGAACTCTCAGATATTGGGGATCCCGGGAAAGGGCCTATTTTTGCGGTCCAACTTAGGCGTAAACCTCGATGCTACCTACTCAGACCCACCCCGCGCGGGGTAAATATGGCACTCATCCCAGCTGGTTCTTGGCGTTCTACGCAGCCACATGTTCATTAACAGTTGTCTGGTAGCACAAAAGTATTACCATGGTCCTAGAAGCACGGCAGAGTTAGTTCGAACCTAATGCCACAAATGAGACAGGACGCCACTGGGTACCGGACATTAGGTCGAGCTCAGTTCGGTAACGGAGAGACCCTGCGGCGTATTTAATTATGCATATGAAACGCGCCCAAGTGACGCCAGGCAGGTCTCAGCAGGTTCCCGTGTTAGCTCGAGGCTAAACATACAAGCCGATTGATCATGGGTTGGGGGCTTCAAATCGTCGAGGACCCCACAGTACCTCGGAGACCAAGACTAGCCGCTGGTAAACACACCATGACCCCGGCCCTCCATTGATGCCACGGCGATTGTTGGAGAGCCCGCAGCGACTGCAAACATCAGATCAGAGTAATACTATCATGCGATAAGTCCCTAACTGACTATGGCCTTCTGTAGAGTCAACTTCACCACATATGCTGTCTCTGGCACGTGGATGGTTTAGAGGATTCAGATTCAAGTCTGGTTAACCATCAAAAAGGTCTTGAGTCTAAAATTGTCGTCTCCTGCGTACGAGATGAAAATACTAGGTAACTACAGGGACTCCGACGTTATGTACGATGCTCCGTCAGAGGCGCCATTCAGGATCACGTTACCGCGAAGAAAAGGGACCAGGAGCTCTTCTCCCCTGCGGTGACGTCTATAGAAATTACACCATTAACCCTCCTGAGAACCGGGAGGCGGGAATCCGTCACGTATGAGAAGGTATTTGCCCGATAATCAATACCCCGGGCTTCTAACTTTTTCCACTCGCTT
>query3 same as query 1 but with 20 insertions
CCAATGAAAAAGCTATGCACTTTGTACAGGGTGCCATCGGGATTTCTGAACTCTCAGATAGTGGGGATCCCGGGAAAGGGCCTATATTTGCGGTCCAACTTAGGCGTAAAACCTCGATCGCTACCTACTCAGACCCACCCCGCGCGGGGTAAATGATGGCACTCATCCCTAGCTGGTTCTTGGCGTTCTACGCAGCCACATGGTTCATTAACAGTTGTCTGGTAGCACAAAAGTATTACCATGGTCCTAGAAGCCCTGGCAGAGTTAGTTCGAACCTAATGCCACAAATGAGACAGGACGCCAATGGGTACCGGACATTAGGTCGAGCTCAGTTCGGTAACGGCAGAGACCCTGCGGCGTACTTAATTATGCAATATGAAACGCGCCCAAGTGACGCTCAGGCAAGTCTCAGCAGGTTCCCGTGTTAGCTCGAGGGTAAACATACAAGCCGATTGAACATGGGTTGGGGGCTTCAAATCGTCGAGGACCCCACAGTACCTCGGAGACCAAGACTAGCCGCTGGTAAACAGCACCATGACCCCGGCTCTCCATTGATGCCACGGCGATTGTTGGAGGAGCCAGCAGCGACTGCAAACATCAGATCAGAGTAATACTAGCATGCGATAAGTCCCTAACTGACTATGGCCTTCTGTAGAGTCAACTTCACCACATATGCTGTCTCTGGCACGTGGATGGTTTAGAGGAATCAGATTCAAGTCTGGTTAACCATCAAACAGGTCTTGAGTCTAAAATTGTCGGTCTCCTGCGTACGAGATGGAAATACTAGGTAACTACAGCTGGACTCCGACGTTATGTACGTTGCTCCGTCAGAGGCGCCATTCAGGATTCACCGTTACCGCGAAAAAAAGGGAACCAGGAGCTCTTCTCCCCTGCGGTCACGTCTATAGAAATGTACACCATTAACCCTCCTGAGAACCGGGAGGCGGGCAATCCGTCACGTATGAGAAGGTATTTGCCCGATAATCAATACCCCAGGCTTCTAACTTTTTCCACTCGCTT
>query4 same as query 1 but with 20 deletions
CCAATGAAAAAGCTATGCACTTGTACAGGGTGCCATCGGGTTTCTGAACTCTCAGATAGTGGGGATCCCGGGAAAGGGCCTATATTTGCGGTCCAACTTAGGCGTAAACCTCATGCTACCTACTCAGACCCACCCCGCGCGGGGTAAATATGGCACCATCCCAGCTGGTTCTTGGCGTTCTACGCAGCCACATGTTCATTAACAGTTGTCTGGTAGCACAAAAGTATTACCATGGTCCTAGAAGCCCGGCAGAGTTAGTTCGACCTAATGCCACAAATGAGACAGGACCCAATGGGTACCGGACATTAGGTCGAGCTCAGTTCGTAACGGAGAGACCCTGCGGCGACTTAATTATGCATATGAAACGCGCCCAAGTGACGCCAGGCAAGTCTCAGCAGGTTCCCGTGTTAGCTCGAGGTAAACATACAAGCCGATTGAACATGGTTGGGGGCTTCAAATCGTCGAGGACCCCACGTACCTCGGAGACCAAGACTAGCCGCTGGTAAACACCCATGACCCCGGCTCTCCATTGATGCCACGCGATTGTTGGAGAGCCAGCAGCGACTGCAAACATCAGATCAGAGTAATACTAGCATGCGATAAGTCCCAACTGACTATGGCCTTCTGTAGAGTCAACTTCACCCATATGCTGTCTCTGGCACGTGGATGGTTTAGAGGAATCAGATTCAAGTCTGGTTAACCATCAAACAGGTCTTGAGTTAAAATTGTCGTCTCCTGCGTACGAGATGGAAATACTAGGTAACTACAGGGACTCCGACGTTAGTACGTTGCTCCGTCAGAGGCGCCATTCAGGATCACGTTACCGCGAAAAAAGGGACCAGGAGCTCTTCTCCCCTGCGGTCACGTCTATAGAATTACACCATTAACCCTCCTGAGAACCGGGAGGCGGGAATCCGTCACTATGAGAAGGTATTTGCCCGATAACAATACCCCAGGCTTCTAACTTTTTCCACTCGCTT
>query5 perfect match from 1+ to 4+ to 6+ to 7+
CCAATGAAAAAGCTATGCACTTTGTACAGGGTGCCATCGGGTTTCTGAACTCTCAGATAGTGGGGATCCCGGGAAAGGGCCTATATTTGCGGTCCAACTTAGGCGTAAACCTCGATGCTACCTACTCAGACCCACCCCGCGCGGGGTAAATATGGCACTCATCCCAGCTGGTTCTTGGCGTTCTACGCAGCCACATGTTCATTAACAGTTGTCTGGTAGCACAAAAGTATTACCATGGTCCTAGAAGCCCGGCAGAGTTAGTTCGAACCTAATGCCACAAATGAGACAGGACGCCAATGGGTACCGGACATTAGGTCGAGCTCAGTTCGGTAACGGAGAGACCCTGCGGCGTACTTAATTATGCATATGAAACGCGCCCAAGTGACGCCAGGCAAGTCTCAGCAGGTTCCCGTGTTAGCTCGAGGGTAAACATACAAGCCGATTGAACATGGGTTGGGGGCTTCAAATCGTCGAGGACCCCACAGTACCTCGGAGACCAAGACTAGCCGCTGGTAAACACACCATGACCCCGGCTCTCCATTGATGCCACGGCGATTGTTGGAGAGCCAGCAGCGACTGCAAACATCAGATCAGAGTAATACTAGCATGCGATAAGTCCCTAACTGACTATGGCCTTCTGTAGAGTCAACTTCACCACATATGCTGTCTCTGGCACGTGGATGGTTTAGAGGAATCAGATTCAAGTCTGGTTAACCATCAAACAGGTCTTGAGTCTAAAATTGTCGTCTCCTGCGTACGAGATGGAAATACTAGGTAACTACAGGGACTCCGACGTTATGTACGTTGCTCCGTCAGAGGCGCCATTCAGGATCACGTTACCGCGAAAAAAAGGGACCAGGAGCTCTTCTCCCCTGCGGTCACGTCTATAGAAATTACACCATTAACCCTCCTGAGAACCGGGAGGCGGGAATCCGTCACGTATGAGAAGGTATTTGCCCGATAATCAATACCCCAGGCTTCTAACTTTTTCCACTCGCTTGAGCCGGCTAGGCCTTTCTGCCCGAAGTTTCGATGGACTGGTGCCAACGCGCAGGCATAGTTTTAGGAGAATTATTCGGGGGCAGTGACAACCAACATCTCGGGTCCTGCCCAACCGGTCTACACGCTAATATAGCGAATCACCGAGAACCCGGCGCCACGCAATGGAACGTCCTTAACTCCGGCAGGCAATTAAAGGGAACGTATGTATAACGCAAAAAAACAGAAAAATAGGCGAATGAATCTTTTCTCTGTGTATCGAAGAATGGCCTCGCGGAGGCATGCGTCATGCTAGCGTGCGGGGTACTCTTGCTATCCATATGGTCCACAGGACACTCGTTGTTTTCGGATTTACCCTTTATGCGCCGGTTTTCAGCCACGCTTATGCCCAGCATCGTTACAACCAGACCGATACTAGATGTATAAAGTCCGCCATGCAGACGAGACCAGTCGGAGATTACCGAGCATTCTATCAGGTCGGCGACCACTAGTGAGCTACTGTCGCCTAGAATTACCTACCGGCGTCCACCATACCTTCGATATTCGCGCCCACTCTCCCATTAGTCGGCACAAGTGGATGTGTTGCGATTGCCCGCTAAGATATTCTAAGGCGTAACGCAGATGAATATTCTACAGAGTTGCCGTACGCGTTGAACACTTCACGGATGATAGGAATTTGCGTATAGAGCGGGTCATTGAAGGGTTATACACTCGTAGTTAACAACGGGCCCGGCTCTATCAGAACACGAGTGCCTTGAATAACATACTCATCACTAAACTTTCTCAACAGTCAATCGAGCAAGTCCATTACCAAGGAGTGCGATGCAGTTTTATTCTCTCGCCAGCACTGTAATAGGCACTAAAAGAGTGATGATAATCATGAGTGCTGAGCTAAGACGGCGTCGGTACATAGCGGTCTTACGGTCAGTCGTAATTCCTCACGAGTCCCGTCCAGTTGAGCGTATCACTCCCAATGTACAAGCAACCCGAGAAGGCTGTGCTTGGAGTCAATCGGATGTAGGATGGTCTCCAGACACGGGGCCACCACTCTTCACGCGTAAAGCAAGAACGTCGAGCAGTCATGAAAGTCTTAGTACCGGACGTGCCGTTTTACTGCGAATATTACCTGAAGCTGTACCGTTATTGGGGGGCAAAGATGGAGTCCTCCTCTTATCATATTTGTATTGACGACAGCCGTGTTCCCGGTTTCCTCAGAGATTTAAGAATAAGGGCTTATTGTAGGCAGAGGGACGCCCTTTTAGTGGCTGGCGTAAAATATCTTCGGATCCCCTTGTCTAACCAGATTAATCGAATTCTCTCATTTAGGACCCTAGTAAGTCATCATTGGTGTTTAAATGCCACCCCGAAGAAACCGCCTAAAAATGTCTATGATTGGTCCACTAAAGTTGATTAAATCAACTCCTAAATCCGCGCGATAGGGCATTAGAGGTTTAATTTTGTATGGCAAGGTACTCCCGATCTTAATGAATGGCCGGAAGTGTTTAAAACGACTACCAAATCCGCATGTTAGGGGATTTCTTATTAATTCTTTTATCGTGAGGAACAGCGGATCTTAATGGATGGCCGCAGGTGGTATGGAAGCTAATAGCGCGGGTGAGAGGGTAATCAGCCGTGTTCACCTACACAACGCTAACGGGCGATTCTATAAGATTCCGCATTGCGTCTACTTATAAGATGTCTCAACGGTATCCGCAACTTGTGAAGTGCCTACTATCCTTAAACGCATATCTCGCCCAGTAGCTTCCCAATATGTGAGCATCAATTGTTGTCCGGGCCGAGATAGTCATGTGCTCACGGAACTTACTGTATGAGTAGTGATTTGAAAGAGTTGTCAGTTTGCTGGTTCAGGTAAAGGTTCCTCACGCTACCTCAAAGTAAGAGAGCGGTCGTGACATTATCCGTGATTTTCTCACTACTATTAGTACTCACGACTCGATTCTGCCGCAGCCATGTTTCGCCAGAATGCCAGTCAGCATTAAG
>query6 matches 1000 bp of node 1+ with 1000 bp inserted in middle (500, 1000, 500)
AGGTATCCTGAGCACGGTTGCGCGTCCGTATCAAGCTCCTCTTTATAGGCCCCGGTTTCTGTTGGTCGTAGAGCGCAGAACGGGTTGGGGGGATGTACGACAATATCGCTTAGTCACCTTTGGGCCACGGTCCGCTACCTTACAGGAATTGAGACCGTCCTTTAATTTCCCTTGCATATATGTTGCGTTTCTTCGACCTTTTAACCGCTCCCTTAGGAGAAAGACAGATAGCTTCTTACCCGTACTCCACCGTTGGCAGCACGATCGCATGTCCCACGTGAACCATTGGTAAACCCTGTGGCCTGTGAGCGACAAAAGCTTTAATGGGAAATTCGCGCCCATAACTTGGTCCGAATACGGGTCCTAGCAACGTTCGTCTGAGTTTGATCTATATAATACGGGCGGTATGTCTGCTTTGATCAACCTCCAATAGCTCGTATGATAGTGCACCCGCTGGTGATCACTCAATGATCTGGGCTCCCCGTTGCAACTACGGGGATCACCCGTTATACTCCATTACCGTCTGTGGGTCACAGCTTGTTGTGGACTGGATTGCCATTCTCTCAGTGTATTACGCAGGCCGGCGCACGGGTCCCATATAAACCTGTCATAGCTTACCTGACTCTACTTGGAAATGTGGCTAGGCCTTTGCCCACGCACCTGATCGGTCCTCGTTTGCTTTTTAGGACCGGATGAACTACAGAGCATTGCAAGAATCTCTACCTGCTTTACAAAGTGCTGGATCCTATTCCAGCGGGATGTTTTATCTAAACACGATGAGAGGAGTATTCGTCAGGCCACATGGCTTTCTTGTTCTGGTCGGATCCATCGTTGGCGCCCGACCCCCCCATTCCATAGTGAGTTCTTCGTCCGAGCCATTGTATGCCAGATCGACAGACAGATAGCGGATCCAGTATATCCCTGGAAACTATAGACGCACAGGTTGGAATCTTAAGTGAAGTCGCGCGTCCAAACCCAGCTCTATTTTAGTGGTCATGGG
>query7 matches the end of 2+ and the start of 8+ (has a 2000 bp insert)
TAACGCTCATCAGCTAACGAAAGAGTTAGAGGCTCGCTAAATCGCACTGTCGGGGTCCCTTGGGTATTTTACACTAGCGTCAGGTAGGCTAGCATGTGTCTTTCCTTCCAGGGGTATGCGGGTGCGTGGACAAATGAGCAGCATACGTATTTACTCGGCGTGCTTGGTCTCTCGTATTTCTCCTGGAGATCAAGGAAATGTTTCATGTCCAAGCGAAAAGCCGCTCTACGGAATGGATCTACGTTACTGCCTGCATAAGGAGACCGGTGTAGCCAAGGACGAAAGCGACCCTAGGTTCTAACCGTCGACTTTGGCGGAAAGGTTTCACTCAGGAAGCAGACACTGATTGACACGGTTTAGCAGAACGTTTGAGGACTAGGTCAAATTGAGTGGTTTAATATCGGCATGTCTGGCTTTAAAATTCAGTATAGTGCGCTGATCGGAGACGAATTAAAAACACGAGTTCCCAAAACCAGGCGGGCTCGCCACGTCGGCTAATCGCATGGAGGCAAACGCAGAACAATGGTTACTATTTCGATACGTGAAACATGTCCCACGGTAGCCCAAAGACTTAAGAGTCTATCACCCCTAGGGCCCTTTCCCGGATATAAACGCCAGGTTGAATCCGCATTTGGAGCTACGATGGATGAGTCTGGGTGGAGCGCGCCCCATTTATACCGTGAGTAGGGTCGACCAAGAACCGCAAGATGCGTCGGTGTACAAATAATTGTCAACAGACCGTCGTGTTTTGAAAATGGTACCAGCATCTTCGGGCGGTCTCAATCAAGCATGGATTACGGTGTTTACTCTGTCCTGCGGTTACCCATGGCCTGTAATCCAGCTCGAGTCAAGCCATTGCCTCTCTGGGACGCCGCATGAACTAATACGTATACTTTGCACGGGTTCACTGCGGTCCGTTCAGAGTCGACCAAGGACACAATCGAGCTCCCATCTGTATGCTCGACTAACTTGTACCCAACCCCCGGAGCTTGGCAGCTCC