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barrnap 0.9+dfsg-2
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  • sloc: perl: 226; makefile: 62; sh: 15
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Source: barrnap
Priority: optional
Section: science
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <satta@debian.org>
Build-Depends: debhelper-compat (= 12),
               hmmer (>= 3.1),
               lua5.1,
               bedtools
Standards-Version: 4.5.0
Homepage: http://www.vicbioinformatics.com/software.barrnap.shtml
Vcs-Browser: https://salsa.debian.org/med-team/barrnap
Vcs-Git: https://salsa.debian.org/med-team/barrnap.git

Package: barrnap
Architecture: all
Depends: ${perl:Depends}, ${shlibs:Depends}, ${misc:Depends}, hmmer (>= 3.1), bedtools
Description: rapid ribosomal RNA prediction
 Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of
 ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea
 (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).
 .
 It takes FASTA DNA sequence as input, and writes GFF3 as output. It uses the
 NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style.
 Multithreading is supported and one can expect roughly linear speed-ups
 with more CPUs.