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|
# for math in lowmem test
SHELL := /bin/bash
$(TESTS_OUT)/pattern.ra: poisson reshape
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/poisson -Y 32 -y 2.5 -Z 32 -z 1.5 -C 8 -e $(TESTS_TMP)/poisson.ra ;\
$(TOOLDIR)/reshape 7 32 32 1 poisson.ra $@ ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
$(TESTS_OUT)/weights.ra: poisson reshape
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/poisson -Y 32 -y 2.5 -Z 32 -z 1.5 -C 8 -e $(TESTS_TMP)/poisson.ra ;\
$(TOOLDIR)/reshape 15 1 32 32 1 poisson.ra $@ ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
$(TESTS_OUT)/pattern_batch.ra: poisson reshape join
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/poisson -s1 -Y 32 -y 2.5 -Z 32 -z 1.5 -C 8 -e poisson1.ra ;\
$(TOOLDIR)/poisson -s2 -Y 32 -y 2.5 -Z 32 -z 1.5 -C 8 -e poisson2.ra ;\
$(TOOLDIR)/poisson -s3 -Y 32 -y 2.5 -Z 32 -z 1.5 -C 8 -e poisson3.ra ;\
$(TOOLDIR)/poisson -s4 -Y 32 -y 2.5 -Z 32 -z 1.5 -C 8 -e poisson4.ra ;\
$(TOOLDIR)/reshape 7 32 32 1 poisson1.ra rpoisson1.ra ;\
$(TOOLDIR)/reshape 7 32 32 1 poisson2.ra rpoisson2.ra ;\
$(TOOLDIR)/reshape 7 32 32 1 poisson3.ra rpoisson3.ra ;\
$(TOOLDIR)/reshape 7 32 32 1 poisson4.ra rpoisson4.ra ;\
$(TOOLDIR)/join 15 rpoisson1.ra rpoisson2.ra rpoisson3.ra rpoisson4.ra $@ ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
$(TESTS_OUT)/train_kspace.ra: phantom join scale fmac $(TESTS_OUT)/pattern.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/phantom -x 32 -N5 -s4 -r1 -k kphan1.ra ;\
$(TOOLDIR)/phantom -x 32 -N5 -s4 -r2 -k kphan2.ra ;\
$(TOOLDIR)/phantom -x 32 -N5 -s4 -r3 -k kphan3.ra ;\
$(TOOLDIR)/phantom -x 32 -N5 -s4 -r4 -k kphan4.ra ;\
$(TOOLDIR)/join 15 kphan1.ra kphan2.ra kphan3.ra kphan4.ra kphan.ra ;\
$(TOOLDIR)/scale 32 kphan.ra kphan.ra ;\
$(TOOLDIR)/fmac kphan.ra $(TESTS_OUT)/pattern.ra $@ ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP) ;\
$(TESTS_OUT)/train_kspace_batch_pattern.ra: phantom join scale fmac $(TESTS_OUT)/pattern_batch.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/phantom -x 32 -N5 -s4 -r1 -k kphan1.ra ;\
$(TOOLDIR)/phantom -x 32 -N5 -s4 -r2 -k kphan2.ra ;\
$(TOOLDIR)/phantom -x 32 -N5 -s4 -r3 -k kphan3.ra ;\
$(TOOLDIR)/phantom -x 32 -N5 -s4 -r4 -k kphan4.ra ;\
$(TOOLDIR)/join 15 kphan1.ra kphan2.ra kphan3.ra kphan4.ra kphan.ra ;\
$(TOOLDIR)/scale 32 kphan.ra kphan.ra ;\
$(TOOLDIR)/fmac kphan.ra $(TESTS_OUT)/pattern_batch.ra $@ ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
$(TESTS_OUT)/train_ref.ra: phantom join scale rss fmac
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/phantom -x 32 -N5 -r1 phan1.ra ;\
$(TOOLDIR)/phantom -x 32 -N5 -r2 phan2.ra ;\
$(TOOLDIR)/phantom -x 32 -N5 -r3 phan3.ra ;\
$(TOOLDIR)/phantom -x 32 -N5 -r4 phan4.ra ;\
$(TOOLDIR)/join 15 phan1.ra phan2.ra phan3.ra phan4.ra phan.ra ;\
$(TOOLDIR)/phantom -x32 -S4 sens.ra ;\
$(TOOLDIR)/rss 8 sens.ra scale.ra ;\
$(TOOLDIR)/fmac phan.ra scale.ra $@ ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP) ;\
$(TESTS_OUT)/train_sens.ra: phantom rss invert fmac repmat
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/phantom -x32 -S4 sens.ra ;\
$(TOOLDIR)/rss 8 sens.ra scale.ra ;\
$(TOOLDIR)/repmat 15 4 sens.ra sens.ra ;\
$(TOOLDIR)/invert scale.ra iscale.ra ;\
$(TOOLDIR)/fmac sens.ra iscale.ra $@ ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
$(TESTS_OUT)/test_kspace.ra: phantom join scale fmac $(TESTS_OUT)/pattern.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/phantom -x 32 -N5 -s4 -r5 -k kphan5.ra ;\
$(TOOLDIR)/phantom -x 32 -N5 -s4 -r6 -k kphan6.ra ;\
$(TOOLDIR)/join 15 kphan5.ra kphan6.ra kphan.ra ;\
$(TOOLDIR)/scale 32 kphan.ra kphan.ra ;\
$(TOOLDIR)/fmac kphan.ra $(TESTS_OUT)/pattern.ra $@ ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
$(TESTS_OUT)/test_ref.ra: phantom join scale rss fmac
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/phantom -x 32 -N5 -r5 phan5.ra ;\
$(TOOLDIR)/phantom -x 32 -N5 -r6 phan6.ra ;\
$(TOOLDIR)/join 15 phan5.ra phan6.ra phan.ra ;\
$(TOOLDIR)/phantom -x32 -S4 sens.ra ;\
$(TOOLDIR)/rss 8 sens.ra scale.ra ;\
$(TOOLDIR)/fmac phan.ra scale.ra $@ ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
$(TESTS_OUT)/test_sens.ra: phantom rss invert fmac repmat
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/phantom -x32 -S4 sens.ra ;\
$(TOOLDIR)/rss 8 sens.ra scale.ra ;\
$(TOOLDIR)/repmat 15 2 sens.ra sens.ra ;\
$(TOOLDIR)/invert scale.ra iscale.ra ;\
$(TOOLDIR)/fmac sens.ra iscale.ra $@ ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
$(TESTS_OUT)/traj_net.ra: traj
set -e ;\
$(TOOLDIR)/traj -x32 -y32 $@
$(TESTS_OUT)/test_kspace_noncart.ra: reshape $(TESTS_OUT)/test_kspace.ra
set -e ;\
$(TOOLDIR)/reshape 7 1 32 32 $(TESTS_OUT)/test_kspace.ra $@
$(TESTS_OUT)/train_kspace_noncart.ra: reshape $(TESTS_OUT)/train_kspace.ra
set -e ;\
$(TOOLDIR)/reshape 7 1 32 32 $(TESTS_OUT)/train_kspace.ra $@
tests/test-reconet-nnvn-train: nrmse $(TESTS_OUT)/pattern.ra reconet \
$(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_ref.ra $(TESTS_OUT)/train_sens.ra \
$(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_ref.ra $(TESTS_OUT)/test_sens.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP); export OMP_NUM_THREADS=2 ;\
$(TOOLDIR)/reconet --network varnet --test -n -t --train-algo e=1 -b2 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights0 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network varnet --test -n -t --train-algo e=20 -b2 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights1 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network varnet --test -a -n --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_sens.ra weights0 out0.ra ;\
$(TOOLDIR)/reconet --network varnet --test -a -n --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_sens.ra weights1 out1.ra ;\
if [ 1 == $$( echo "`$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra` <= 1.29 * `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" | bc ) ] ; then \
echo "untrained error: `$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra`" ;\
echo "trained error: `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" ;\
false ;\
fi ;\
rm *.ra ; rm *.hdr ; rm *.cfl ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-reconet-nnmodl-train: nrmse $(TESTS_OUT)/pattern.ra reconet \
$(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_ref.ra $(TESTS_OUT)/train_sens.ra \
$(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_ref.ra $(TESTS_OUT)/test_sens.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP); export OMP_NUM_THREADS=2 ;\
$(TOOLDIR)/reconet --network modl --test -t -n --train-algo e=1 -b2 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights0 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network modl --test -t -n --train-algo e=10 -b2 -I1 --valid-data=pattern=$(TESTS_OUT)/pattern.ra,kspace=$(TESTS_OUT)/test_kspace.ra,coil=$(TESTS_OUT)/test_sens.ra,ref=$(TESTS_OUT)/test_ref.ra --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights01 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network modl --test -lweights01 -n -t --train-algo e=10 -b2 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights1 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network modl --test -a -n --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_sens.ra weights0 out0.ra ;\
$(TOOLDIR)/reconet --network modl --test -a -n --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_sens.ra weights1 out1.ra ;\
if [ 1 == $$( echo "`$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra` <= 1.05 * `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" | bc ) ] ; then \
echo "untrained error: `$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra`" ;\
echo "trained error: `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" ;\
false ;\
fi ;\
rm *.ra ; rm *.hdr ; rm *.cfl ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-reconet-nnmodl-train-noncart: nrmse $(TESTS_OUT)/weights.ra reconet \
$(TESTS_OUT)/train_kspace_noncart.ra $(TESTS_OUT)/train_ref.ra $(TESTS_OUT)/train_sens.ra \
$(TESTS_OUT)/test_kspace_noncart.ra $(TESTS_OUT)/test_ref.ra $(TESTS_OUT)/test_sens.ra \
$(TESTS_OUT)/traj_net.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP); export OMP_NUM_THREADS=2 ;\
$(TOOLDIR)/reconet --network modl --test -t -n --train-algo e=1 -b2 --pattern=$(TESTS_OUT)/weights.ra --trajectory=$(TESTS_OUT)/traj_net.ra $(TESTS_OUT)/train_kspace_noncart.ra $(TESTS_OUT)/train_sens.ra weights0 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network modl --test -t -n --train-algo e=10 -b2 -I1 --valid-data=trajectory=$(TESTS_OUT)/traj_net.ra,pattern=$(TESTS_OUT)/weights.ra,kspace=$(TESTS_OUT)/test_kspace_noncart.ra,coil=$(TESTS_OUT)/test_sens.ra,ref=$(TESTS_OUT)/test_ref.ra --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=$(TESTS_OUT)/weights.ra $(TESTS_OUT)/train_kspace_noncart.ra $(TESTS_OUT)/train_sens.ra weights01 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network modl --test -lweights01 -n -t --train-algo e=10 -b2 --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=$(TESTS_OUT)/weights.ra $(TESTS_OUT)/train_kspace_noncart.ra $(TESTS_OUT)/train_sens.ra weights1 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network modl --test -a -n --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=$(TESTS_OUT)/weights.ra $(TESTS_OUT)/test_kspace_noncart.ra $(TESTS_OUT)/test_sens.ra weights0 out0.ra ;\
$(TOOLDIR)/reconet --network modl --test -a -n --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=$(TESTS_OUT)/weights.ra $(TESTS_OUT)/test_kspace_noncart.ra $(TESTS_OUT)/test_sens.ra weights1 out1.ra ;\
if [ 1 == $$( echo "`$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra` <= 1.05 * `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" | bc ) ] ; then \
echo "untrained error: `$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra`" ;\
echo "trained error: `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" ;\
false ;\
fi ;\
rm *.ra ; rm *.hdr ; rm *.cfl ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-reconet-nnmodl-train-noncart-init: nrmse $(TESTS_OUT)/weights.ra reconet \
$(TESTS_OUT)/train_kspace_noncart.ra $(TESTS_OUT)/train_ref.ra $(TESTS_OUT)/train_sens.ra \
$(TESTS_OUT)/test_kspace_noncart.ra $(TESTS_OUT)/test_ref.ra $(TESTS_OUT)/test_sens.ra \
$(TESTS_OUT)/traj_net.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP); export OMP_NUM_THREADS=2 ;\
$(TOOLDIR)/reconet --network modl --initial-reco=sense --test -t -n --train-algo e=1 -b2 --pattern=$(TESTS_OUT)/weights.ra --trajectory=$(TESTS_OUT)/traj_net.ra $(TESTS_OUT)/train_kspace_noncart.ra $(TESTS_OUT)/train_sens.ra weights0 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network modl --initial-reco=sense --test -t -n --train-algo e=10 -b2 --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=$(TESTS_OUT)/weights.ra $(TESTS_OUT)/train_kspace_noncart.ra $(TESTS_OUT)/train_sens.ra weights1 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network modl --initial-reco=sense --test -a -n --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=$(TESTS_OUT)/weights.ra $(TESTS_OUT)/test_kspace_noncart.ra $(TESTS_OUT)/test_sens.ra weights0 out0.ra ;\
$(TOOLDIR)/reconet --network modl --initial-reco=sense --test -a -n --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=$(TESTS_OUT)/weights.ra $(TESTS_OUT)/test_kspace_noncart.ra $(TESTS_OUT)/test_sens.ra weights1 out1.ra ;\
if [ 1 == $$( echo "`$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra` <= 1.05 * `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" | bc ) ] ; then \
echo "untrained error: `$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra`" ;\
echo "trained error: `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" ;\
false ;\
fi ;\
rm *.ra ; rm *.hdr ; rm *.cfl ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-reconet-nnvn-train-noncart-init: nrmse $(TESTS_OUT)/weights.ra reconet \
$(TESTS_OUT)/train_kspace_noncart.ra $(TESTS_OUT)/train_ref.ra $(TESTS_OUT)/train_sens.ra \
$(TESTS_OUT)/test_kspace_noncart.ra $(TESTS_OUT)/test_ref.ra $(TESTS_OUT)/test_sens.ra \
$(TESTS_OUT)/traj_net.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP); export OMP_NUM_THREADS=2 ;\
$(TOOLDIR)/reconet --network varnet --initial-reco=sense,fix-lambda=0.1 --test -t -n --train-algo e=1 -b2 --pattern=$(TESTS_OUT)/weights.ra --trajectory=$(TESTS_OUT)/traj_net.ra $(TESTS_OUT)/train_kspace_noncart.ra $(TESTS_OUT)/train_sens.ra weights0 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network varnet --initial-reco=sense,fix-lambda=0.1 --test -t -n --train-algo e=10 -b2 --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=$(TESTS_OUT)/weights.ra $(TESTS_OUT)/train_kspace_noncart.ra $(TESTS_OUT)/train_sens.ra weights1 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network varnet --initial-reco=sense,fix-lambda=0.1 --test -a -n --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=$(TESTS_OUT)/weights.ra $(TESTS_OUT)/test_kspace_noncart.ra $(TESTS_OUT)/test_sens.ra weights0 out0.ra ;\
$(TOOLDIR)/reconet --network varnet --initial-reco=sense,fix-lambda=0.1 --test -a -n --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=$(TESTS_OUT)/weights.ra $(TESTS_OUT)/test_kspace_noncart.ra $(TESTS_OUT)/test_sens.ra weights1 out1.ra ;\
if [ 1 == $$( echo "`$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra` <= 1.05 * `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" | bc ) ] ; then \
echo "untrained error: `$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra`" ;\
echo "trained error: `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" ;\
false ;\
fi ;\
rm *.ra ; rm *.hdr ; rm *.cfl ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-reconet-nnmodl-train-basis: nrmse $(TESTS_OUT)/weights.ra reconet repmat ones scale resize \
$(TESTS_OUT)/train_kspace_noncart.ra $(TESTS_OUT)/train_ref.ra $(TESTS_OUT)/train_sens.ra \
$(TESTS_OUT)/test_kspace_noncart.ra $(TESTS_OUT)/test_ref.ra $(TESTS_OUT)/test_sens.ra \
$(TESTS_OUT)/traj_net.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP); export OMP_NUM_THREADS=2 ;\
$(TOOLDIR)/repmat 6 2 $(TESTS_OUT)/train_ref.ra trn_ref.ra ;\
$(TOOLDIR)/repmat 6 2 $(TESTS_OUT)/test_ref.ra tst_ref.ra ;\
$(TOOLDIR)/resize 5 2 $(TESTS_OUT)/train_kspace_noncart.ra trn_ksp.ra ;\
$(TOOLDIR)/resize 5 2 $(TESTS_OUT)/test_kspace_noncart.ra tst_ksp.ra ;\
$(TOOLDIR)/resize 5 2 $(TESTS_OUT)/weights.ra pat.ra ;\
$(TOOLDIR)/ones 7 1 1 1 1 1 1 2 bas1 ;\
$(TOOLDIR)/scale 0.70710678118 bas1 bas2 ;\
$(TOOLDIR)/resize 5 2 bas2 bas ;\
$(TOOLDIR)/reconet --network modl --initial-reco=sense -Bbas --test -t -n --train-algo e=1 -b2 --pattern=pat.ra --trajectory=$(TESTS_OUT)/traj_net.ra trn_ksp.ra $(TESTS_OUT)/train_sens.ra weights0 trn_ref.ra ;\
$(TOOLDIR)/reconet --network modl --initial-reco=sense -Bbas --test -t -n --train-algo e=10 -b2 --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=pat.ra trn_ksp.ra $(TESTS_OUT)/train_sens.ra weights1 trn_ref.ra ;\
$(TOOLDIR)/reconet --network modl --initial-reco=sense -Bbas --test -a -n --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=pat.ra tst_ksp.ra $(TESTS_OUT)/test_sens.ra weights0 out0.ra ;\
$(TOOLDIR)/reconet --network modl --initial-reco=sense -Bbas --test -a -n --trajectory=$(TESTS_OUT)/traj_net.ra --pattern=pat.ra tst_ksp.ra $(TESTS_OUT)/test_sens.ra weights1 out1.ra ;\
if [ 1 == $$( echo "`$(TOOLDIR)/nrmse out0.ra tst_ref.ra` <= 1.05 * `$(TOOLDIR)/nrmse out1.ra tst_ref.ra`" | bc ) ] ; then \
echo "untrained error: `$(TOOLDIR)/nrmse out0.ra tst_ref.ra`" ;\
echo "trained error: `$(TOOLDIR)/nrmse out1.ra tst_ref.ra`" ;\
false ;\
fi ;\
rm *.ra ; rm *.hdr ; rm *.cfl ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-reconet-nnvn-train-max-eigen: nrmse $(TESTS_OUT)/pattern.ra reconet \
$(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_ref.ra $(TESTS_OUT)/train_sens.ra \
$(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_ref.ra $(TESTS_OUT)/test_sens.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP); export OMP_NUM_THREADS=2 ;\
$(TOOLDIR)/reconet --network varnet --test -n -t --data-consistency=gradient-max-eigen --train-algo e=1 -b2 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights0 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network varnet --test -n -t --data-consistency=gradient-max-eigen --train-algo e=20 -b2 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights1 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network varnet --test -a -n --data-consistency=gradient-max-eigen --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_sens.ra weights0 out0.ra ;\
$(TOOLDIR)/reconet --network varnet --test -a -n --data-consistency=gradient-max-eigen --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_sens.ra weights1 out1.ra ;\
if [ 1 == $$( echo "`$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra` <= 1.29 * `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" | bc ) ] ; then \
echo "untrained error: `$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra`" ;\
echo "trained error: `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" ;\
false ;\
fi ;\
rm *.ra ; rm *.hdr ; rm *.cfl ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-reconet-nnunet-train: nrmse $(TESTS_OUT)/pattern.ra reconet \
$(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_ref.ra $(TESTS_OUT)/train_sens.ra \
$(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_ref.ra $(TESTS_OUT)/test_sens.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP); export OMP_NUM_THREADS=2 ;\
$(TOOLDIR)/reconet --network unet --test -t -n --train-algo e=1 -b2 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights0 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network unet --test -t -n --train-algo e=10 -b2 -I1 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights01 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network unet --test -lweights01 -n -t --train-algo e=10 -b2 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights1 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet --network unet --test -a -n --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_sens.ra weights0 out0.ra ;\
$(TOOLDIR)/reconet --network unet --test -a -n --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_sens.ra weights1 out1.ra ;\
if [ 1 == $$( echo "`$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra` <= 1.05 * `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" | bc ) ] ; then \
echo "untrained error: `$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra`" ;\
echo "trained error: `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" ;\
false ;\
fi ;\
rm *.ra ; rm *.hdr ; rm *.cfl ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-reconet-nnvn-train-gpu: nrmse $(TESTS_OUT)/pattern.ra reconet \
$(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_ref.ra $(TESTS_OUT)/train_sens.ra \
$(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_ref.ra $(TESTS_OUT)/test_sens.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP); export OMP_NUM_THREADS=2 ;\
$(TOOLDIR)/reconet -g --network varnet --test -n -t --train-algo e=1 -b2 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights0 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet -g --network varnet --test -n -t --train-algo e=20 -b2 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights1 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet -g --network varnet --test -a -n --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_sens.ra weights0 out0.ra ;\
$(TOOLDIR)/reconet -g --network varnet --test -a -n --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_sens.ra weights1 out1.ra ;\
if [ 1 == $$( echo "`$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra` <= 1.3 * `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" | bc ) ] ; then \
echo "untrained error: `$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra`" ;\
echo "trained error: `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" ;\
false ;\
fi ;\
rm *.ra ; rm *.hdr ; rm *.cfl ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-reconet-nnmodl-train-gpu: nrmse $(TESTS_OUT)/pattern.ra reconet \
$(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_ref.ra $(TESTS_OUT)/train_sens.ra \
$(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_ref.ra $(TESTS_OUT)/test_sens.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP); export OMP_NUM_THREADS=2 ;\
$(TOOLDIR)/reconet -g --network modl --test -t -n --train-algo e=1 -b2 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights0 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet -g --network modl --test -t -n --train-algo e=10 -b2 -I1 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights01 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet -g --network modl --test -lweights01 -n -t --train-algo e=10 -b2 --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/train_kspace.ra $(TESTS_OUT)/train_sens.ra weights1 $(TESTS_OUT)/train_ref.ra ;\
$(TOOLDIR)/reconet -g --network modl --test -a -n --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_sens.ra weights0 out0.ra ;\
$(TOOLDIR)/reconet -g --network modl --test -a -n --pattern=$(TESTS_OUT)/pattern.ra $(TESTS_OUT)/test_kspace.ra $(TESTS_OUT)/test_sens.ra weights1 out1.ra ;\
if [ 1 == $$( echo "`$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra` <= 1.05 * `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" | bc ) ] ; then \
echo "untrained error: `$(TOOLDIR)/nrmse out0.ra $(TESTS_OUT)/test_ref.ra`" ;\
echo "trained error: `$(TOOLDIR)/nrmse out1.ra $(TESTS_OUT)/test_ref.ra`" ;\
false ;\
fi ;\
rm *.ra ; rm *.hdr ; rm *.cfl ; cd .. ; rmdir $(TESTS_TMP)
touch $@
TESTS += tests/test-reconet-nnvn-train
TESTS += tests/test-reconet-nnvn-train-max-eigen
TESTS += tests/test-reconet-nnmodl-train
TESTS += tests/test-reconet-nnmodl-train-noncart
TESTS += tests/test-reconet-nnmodl-train-noncart-init
TESTS += tests/test-reconet-nnvn-train-noncart-init
TESTS += tests/test-reconet-nnmodl-train-basis
TESTS_GPU += tests/test-reconet-nnvn-train-gpu
TESTS_GPU += tests/test-reconet-nnmodl-train-gpu
|
