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|
# for math in lowmem test
SHELL=/bin/bash
tests/test-pics-pi: pics scale nrmse $(TESTS_OUT)/shepplogan.ra $(TESTS_OUT)/shepplogan_coil_ksp.ra $(TESTS_OUT)/coils.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/pics -S -r0.001 $(TESTS_OUT)/shepplogan_coil_ksp.ra $(TESTS_OUT)/coils.ra reco.ra ;\
$(TOOLDIR)/scale 128. reco.ra reco2.ra ;\
$(TOOLDIR)/nrmse -t 0.23 reco2.ra $(TESTS_OUT)/shepplogan.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-noncart: traj scale phantom ones pics nufft nrmse
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -x256 -y64 traj.ra ;\
$(TOOLDIR)/scale 0.5 traj.ra traj2.ra ;\
$(TOOLDIR)/phantom -t traj2.ra ksp.ra ;\
$(TOOLDIR)/ones 3 128 128 1 o.ra ;\
$(TOOLDIR)/pics -S -r0.001 -t traj2.ra ksp.ra o.ra reco.ra ;\
$(TOOLDIR)/nufft traj2.ra reco.ra k2.ra ;\
$(TOOLDIR)/nrmse -t 0.002 ksp.ra k2.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-cs: traj scale phantom ones pics nrmse $(TESTS_OUT)/shepplogan.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -x256 -y48 traj.ra ;\
$(TOOLDIR)/scale 0.5 traj.ra traj2.ra ;\
$(TOOLDIR)/phantom -t traj2.ra ksp.ra ;\
$(TOOLDIR)/ones 3 128 128 1 o.ra ;\
$(TOOLDIR)/pics -S -RT:7:0:0.001 -u0.1 -e -t traj2.ra ksp.ra o.ra reco.ra ;\
$(TOOLDIR)/scale 128. reco.ra reco2.ra ;\
$(TOOLDIR)/nrmse -t 0.22 reco2.ra $(TESTS_OUT)/shepplogan.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-wavl1-dau2: traj scale phantom ones pics nrmse $(TESTS_OUT)/shepplogan.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -x256 -y48 traj.ra ;\
$(TOOLDIR)/scale 0.5 traj.ra traj2.ra ;\
$(TOOLDIR)/phantom -t traj2.ra ksp.ra ;\
$(TOOLDIR)/ones 3 128 128 1 o.ra ;\
$(TOOLDIR)/pics -S --wavelet=dau2 -RW:3:0:0.001 -i150 -e -t traj2.ra ksp.ra o.ra reco.ra ;\
$(TOOLDIR)/scale 128. reco.ra reco2.ra ;\
$(TOOLDIR)/nrmse -t 0.23 reco2.ra $(TESTS_OUT)/shepplogan.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-wavl1-haar: traj scale phantom ones pics nrmse $(TESTS_OUT)/shepplogan.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -x256 -y48 traj.ra ;\
$(TOOLDIR)/scale 0.5 traj.ra traj2.ra ;\
$(TOOLDIR)/phantom -t traj2.ra ksp.ra ;\
$(TOOLDIR)/ones 3 128 128 1 o.ra ;\
$(TOOLDIR)/pics -S --wavelet=haar -RW:3:0:0.001 -i150 -e -t traj2.ra ksp.ra o.ra reco.ra ;\
$(TOOLDIR)/scale 128. reco.ra reco2.ra ;\
$(TOOLDIR)/nrmse -t 0.22 reco2.ra $(TESTS_OUT)/shepplogan.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-wavl1-cdf44: traj scale phantom ones pics nrmse $(TESTS_OUT)/shepplogan.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -x256 -y48 traj.ra ;\
$(TOOLDIR)/scale 0.5 traj.ra traj2.ra ;\
$(TOOLDIR)/phantom -t traj2.ra ksp.ra ;\
$(TOOLDIR)/ones 3 128 128 1 o.ra ;\
$(TOOLDIR)/pics -S --wavelet=cdf44 -RW:3:0:0.001 -i150 -e -t traj2.ra ksp.ra o.ra reco.ra ;\
$(TOOLDIR)/scale 128. reco.ra reco2.ra ;\
$(TOOLDIR)/nrmse -t 0.235 reco2.ra $(TESTS_OUT)/shepplogan.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-poisson-wavl1: poisson squeeze fft fmac ones pics nrmse $(TESTS_OUT)/shepplogan.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/poisson -Y128 -Z128 -y1.2 -z1.2 -e -v -C24 p.ra ;\
$(TOOLDIR)/squeeze p.ra p2.ra ;\
$(TOOLDIR)/fft -u 7 $(TESTS_OUT)/shepplogan.ra ksp1.ra ;\
$(TOOLDIR)/fmac ksp1.ra p2.ra ksp.ra ;\
$(TOOLDIR)/ones 3 128 128 1 o.ra ;\
$(TOOLDIR)/pics -S -RW:3:0:0.01 -i50 ksp.ra o.ra reco.ra ;\
$(TOOLDIR)/nrmse -t 0.22 $(TESTS_OUT)/shepplogan.ra reco.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-bpwavl1: scale fft noise fmac ones upat squeeze pics saxpy vec nrmse $(TESTS_OUT)/shepplogan.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/scale 50 $(TESTS_OUT)/shepplogan.ra shepp.ra ;\
$(TOOLDIR)/fft -u 7 shepp.ra ksp1.ra ;\
$(TOOLDIR)/noise -s 1 -n 1 ksp1.ra ksp2.ra ;\
$(TOOLDIR)/ones 3 128 128 1 o.ra ;\
$(TOOLDIR)/upat -Y 128 -Z 128 -y 2 -z 2 pat.ra ;\
$(TOOLDIR)/squeeze pat.ra pat.ra ;\
$(TOOLDIR)/fmac ksp2.ra pat.ra ksp3.ra ;\
$(TOOLDIR)/pics -a -P 64 -w1. -n -RW:3:0:1. -i50 ksp3.ra o.ra reco.ra ;\
$(TOOLDIR)/pics -m -P 64 -w1. -n -RW:3:0:1. -i100 -u .5 ksp3.ra o.ra reco2.ra ;\
$(TOOLDIR)/fft -u 3 reco.ra kreco.ra ;\
$(TOOLDIR)/saxpy -- -1 kreco.ra ksp3.ra ereco.ra ;\
$(TOOLDIR)/fmac ereco.ra pat.ra preco.ra ;\
$(TOOLDIR)/fmac -C -s 3 preco.ra preco.ra e.ra ;\
$(TOOLDIR)/fft -u 3 reco2.ra kreco2.ra ;\
$(TOOLDIR)/saxpy -- -1 kreco2.ra ksp3.ra ereco2.ra ;\
$(TOOLDIR)/fmac ereco2.ra pat.ra preco2.ra ;\
$(TOOLDIR)/fmac -C -s 3 preco2.ra preco2.ra e2.ra ;\
$(TOOLDIR)/vec 4096 f.ra ;\
$(TOOLDIR)/nrmse -t .001 f.ra e.ra ;\
$(TOOLDIR)/nrmse -t .001 f.ra e2.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-bp-noncart: traj scale phantom ones pics nrmse
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -x256 -y64 traj.ra ;\
$(TOOLDIR)/scale 0.5 traj.ra traj2.ra ;\
$(TOOLDIR)/phantom -t traj2.ra ksp.ra ;\
$(TOOLDIR)/ones 3 128 128 1 o.ra ;\
$(TOOLDIR)/pics -e -S -RW:3:0:0.0001 -t traj2.ra ksp.ra o.ra reco1.ra ;\
$(TOOLDIR)/pics -e -a -P0.1 -S -RW:3:0:0.0001 -t traj2.ra ksp.ra o.ra reco2.ra ;\
$(TOOLDIR)/nrmse -t 0.09 reco1.ra reco2.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-joint-wavl1: poisson reshape fft fmac ones pics slice nrmse $(TESTS_OUT)/shepplogan.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/poisson -Y128 -Z128 -y1.1 -z1.1 -e -v -C24 -T2 p.ra ;\
$(TOOLDIR)/reshape 63 128 128 1 1 1 2 p.ra p2.ra ;\
$(TOOLDIR)/fft -u 7 $(TESTS_OUT)/shepplogan.ra ksp1.ra ;\
$(TOOLDIR)/fmac ksp1.ra p2.ra ksp.ra ;\
$(TOOLDIR)/ones 3 128 128 1 o.ra ;\
$(TOOLDIR)/pics -S -RW:3:32:0.02 -i50 ksp.ra o.ra reco2.ra ;\
$(TOOLDIR)/slice 5 0 reco2.ra reco.ra ;\
$(TOOLDIR)/nrmse -t 0.22 $(TESTS_OUT)/shepplogan.ra reco.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-pics: traj scale phantom pics nrmse $(TESTS_OUT)/shepplogan.ra $(TESTS_OUT)/coils.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -x256 -y32 traj.ra ;\
$(TOOLDIR)/scale 0.5 traj.ra traj2.ra ;\
$(TOOLDIR)/phantom -s8 -t traj2.ra ksp.ra ;\
$(TOOLDIR)/pics -S -RT:7:0:0.001 -u1000000000. -e -t traj2.ra ksp.ra $(TESTS_OUT)/coils.ra reco.ra ;\
$(TOOLDIR)/scale 128. reco.ra reco2.ra ;\
$(TOOLDIR)/nrmse -t 0.22 reco2.ra $(TESTS_OUT)/shepplogan.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
# test that weights =0.5 have no effect
tests/test-pics-weights: pics ones nrmse $(TESTS_OUT)/shepplogan.ra $(TESTS_OUT)/shepplogan_coil_ksp.ra $(TESTS_OUT)/coils.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/ones 2 128 128 weights.ra ;\
$(TOOLDIR)/scale 0.5 weights.ra weights2.ra ;\
$(TOOLDIR)/pics -S -r0.001 $(TESTS_OUT)/shepplogan_coil_ksp.ra $(TESTS_OUT)/coils.ra reco1.ra ;\
$(TOOLDIR)/pics -S -r0.001 -p weights2.ra $(TESTS_OUT)/shepplogan_coil_ksp.ra $(TESTS_OUT)/coils.ra reco2.ra ;\
$(TOOLDIR)/nrmse -t 0.000001 reco2.ra reco1.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
# test that weights =0.5 have no effect
# FIXME: this was 0.005 before but fails on travis
tests/test-pics-noncart-weights: traj scale ones phantom pics nrmse $(TESTS_OUT)/coils.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -x256 -y32 traj.ra ;\
$(TOOLDIR)/scale 0.5 traj.ra traj2.ra ;\
$(TOOLDIR)/phantom -s8 -t traj2.ra ksp.ra ;\
$(TOOLDIR)/ones 4 1 256 32 1 weights.ra ;\
$(TOOLDIR)/scale 0.5 weights.ra weights2.ra ;\
$(TOOLDIR)/pics -S -r0.001 -p weights2.ra -t traj2.ra ksp.ra $(TESTS_OUT)/coils.ra reco1.ra ;\
$(TOOLDIR)/pics -S -r0.001 -t traj2.ra ksp.ra $(TESTS_OUT)/coils.ra reco2.ra ;\
$(TOOLDIR)/nrmse -t 0.010 reco1.ra reco2.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-warmstart: pics scale nrmse $(TESTS_OUT)/shepplogan_coil_ksp.ra $(TESTS_OUT)/coils.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/ones 3 128 128 1 o.ra ;\
$(TOOLDIR)/pics -i0 -Wo.ra $(TESTS_OUT)/shepplogan_coil_ksp.ra $(TESTS_OUT)/coils.ra reco.ra ;\
$(TOOLDIR)/nrmse -t 0. o.ra reco.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-batch: pics repmat nrmse $(TESTS_OUT)/shepplogan_coil_ksp.ra $(TESTS_OUT)/coils.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/repmat 5 32 $(TESTS_OUT)/shepplogan_coil_ksp.ra kspaces.ra ;\
$(TOOLDIR)/pics -r0.01 -L32 kspaces.ra $(TESTS_OUT)/coils.ra reco1.ra ;\
$(TOOLDIR)/pics -r0.01 kspaces.ra $(TESTS_OUT)/coils.ra reco2.ra ;\
$(TOOLDIR)/nrmse -t 0. reco1.ra reco2.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-tedim: phantom fmac fft pics nrmse
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/phantom -s4 -m coils.ra ;\
$(TOOLDIR)/phantom -m img.ra ;\
$(TOOLDIR)/fmac img.ra coils.ra cimg.ra ;\
$(TOOLDIR)/fft -u 7 cimg.ra ksp.ra ;\
$(TOOLDIR)/pics -i10 -w 1. -m ksp.ra coils.ra reco.ra ;\
$(TOOLDIR)/nrmse -t 0.01 img.ra reco.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-basis: ones delta fmac pics nrmse repmat scale slice $(TESTS_OUT)/shepplogan_coil_ksp.ra $(TESTS_OUT)/coils.ra
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/pics -S $(TESTS_OUT)/shepplogan_coil_ksp.ra $(TESTS_OUT)/coils.ra gold.ra ;\
$(TOOLDIR)/delta 16 33 128 p.ra ;\
$(TOOLDIR)/fmac $(TESTS_OUT)/shepplogan_coil_ksp.ra p.ra pk.ra ;\
$(TOOLDIR)/ones 6 1 1 1 1 1 128 o.ra ;\
$(TOOLDIR)/repmat 6 2 o.ra o2.ra ;\
$(TOOLDIR)/pics -S -Bo2.ra pk.ra $(TESTS_OUT)/coils.ra reco.ra ;\
$(TOOLDIR)/scale 2. reco.ra reco2.ra ;\
$(TOOLDIR)/slice 6 0 reco2.ra reco20.ra ;\
$(TOOLDIR)/nrmse -t 0.000001 gold.ra reco20.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-basis-noncart: traj scale phantom delta fmac ones repmat pics slice nrmse
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -x256 -D -y31 traj.ra ;\
$(TOOLDIR)/scale 0.5 traj.ra traj2.ra ;\
$(TOOLDIR)/phantom -t traj2.ra ksp.ra ;\
$(TOOLDIR)/delta 16 36 31 p.ra ;\
$(TOOLDIR)/fmac ksp.ra p.ra pk.ra ;\
$(TOOLDIR)/repmat 1 256 p.ra p2.ra ;\
$(TOOLDIR)/ones 6 1 1 1 1 1 31 o.ra ;\
$(TOOLDIR)/repmat 6 2 o.ra o2.ra ;\
$(TOOLDIR)/ones 3 128 128 1 coils.ra ;\
$(TOOLDIR)/pics -r0.001 -t traj2.ra -pp2.ra -Bo2.ra pk.ra coils.ra reco1.ra ;\
$(TOOLDIR)/pics -r0.001 -t traj2.ra ksp.ra coils.ra reco.ra ;\
$(TOOLDIR)/scale 2. reco1.ra reco2.ra ;\
$(TOOLDIR)/slice 6 0 reco2.ra reco20.ra ;\
$(TOOLDIR)/nrmse -t 0.002 reco.ra reco20.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-basis-noncart2: traj scale phantom delta fmac ones repmat pics slice nrmse bitmask
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -x256 -D -y31 traj.ra ;\
$(TOOLDIR)/scale 0.5 traj.ra traj2.ra ;\
$(TOOLDIR)/phantom -t traj2.ra ksp.ra ;\
$(TOOLDIR)/delta 16 36 31 p.ra ;\
$(TOOLDIR)/fmac ksp.ra p.ra pk.ra ;\
$(TOOLDIR)/repmat 1 256 p.ra p2.ra ;\
$(TOOLDIR)/ones 7 1 1 1 1 1 31 2 o.ra ;\
$(TOOLDIR)/ones 3 128 128 1 coils.ra ;\
$(TOOLDIR)/pics -S -r0.001 -t traj2.ra -pp2.ra -Bo.ra pk.ra coils.ra reco.ra ;\
$(TOOLDIR)/fmac -s $$($(TOOLDIR)/bitmask 6) reco.ra o.ra reco2.ra ;\
$(TOOLDIR)/nufft traj2.ra reco2.ra k2.ra ;\
$(TOOLDIR)/fmac k2.ra p2.ra pk2.ra ;\
$(TOOLDIR)/nrmse -t 0.003 pk.ra pk2.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-basis-noncart-memory: traj scale phantom ones join transpose pics slice nrmse
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -x256 -D -y31 traj.ra ;\
$(TOOLDIR)/scale 0.5 traj.ra traj2.ra ;\
$(TOOLDIR)/phantom -t traj2.ra ksp.ra ;\
$(TOOLDIR)/ones 7 1 1 1 1 1 31 2 o.ra ;\
$(TOOLDIR)/ones 3 128 128 1 coils.ra ;\
$(TOOLDIR)/transpose 2 5 traj2.ra traj3.ra ;\
$(TOOLDIR)/transpose 2 5 ksp.ra ksp1.ra ;\
$(TOOLDIR)/pics -r0.001 -t traj3.ra -Bo.ra ksp1.ra coils.ra reco1.ra ;\
$(TOOLDIR)/pics -r0.001 -t traj2.ra ksp.ra coils.ra reco.ra ;\
$(TOOLDIR)/scale 2. reco1.ra reco2.ra ;\
$(TOOLDIR)/slice 6 0 reco2.ra reco20.ra ;\
$(TOOLDIR)/nrmse -t 0.0021 reco.ra reco20.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-basis-noncart-memory2: traj scale phantom ones join noise transpose fmac pics slice nrmse zeros
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -x256 -D -y301 traj.ra ;\
$(TOOLDIR)/scale 0.5 traj.ra traj2.ra ;\
$(TOOLDIR)/phantom -t traj2.ra ksp.ra ;\
$(TOOLDIR)/phantom p.ra ;\
$(TOOLDIR)/scale 0.5 ksp.ra ksp2.ra ;\
$(TOOLDIR)/zeros 7 1 1 1 1 1 301 2 o.ra ;\
$(TOOLDIR)/noise o.ra o1.ra ;\
$(TOOLDIR)/join 6 ksp.ra ksp2.ra ksp3.ra ;\
$(TOOLDIR)/transpose 2 5 ksp3.ra ksp4.ra ;\
$(TOOLDIR)/fmac -s 64 ksp4.ra o1.ra ksp5.ra ;\
$(TOOLDIR)/ones 3 128 128 1 coils.ra ;\
$(TOOLDIR)/transpose 2 5 traj2.ra traj3.ra ;\
$(TOOLDIR)/pics -S -U -i100 -r0. -t traj3.ra -Bo1.ra ksp5.ra coils.ra reco1.ra ;\
$(TOOLDIR)/slice 6 0 reco1.ra reco.ra ;\
$(TOOLDIR)/slice 6 1 reco1.ra reco2.ra ;\
$(TOOLDIR)/scale 2. reco2.ra reco3.ra ;\
$(TOOLDIR)/nrmse -s -t 0.25 reco.ra p.ra ;\
$(TOOLDIR)/nrmse -s -t 0.25 reco3.ra p.ra ;\
$(TOOLDIR)/nrmse -t 0.06 reco.ra reco3.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-noncart-sms: traj slice phantom conj join fft flip pics nrmse
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -y55 -m2 -r t.ra ;\
$(TOOLDIR)/slice 13 0 t.ra t0.ra ;\
$(TOOLDIR)/slice 13 1 t.ra t1.ra ;\
$(TOOLDIR)/phantom -t t0.ra -s8 -k k0.ra ;\
$(TOOLDIR)/phantom -t t1.ra -s8 -k k1.ra ;\
$(TOOLDIR)/conj k1.ra k1C.ra ;\
$(TOOLDIR)/join 13 k0.ra k1C.ra k.ra ;\
$(TOOLDIR)/fft -n 8192 k.ra kk.ra ;\
$(TOOLDIR)/phantom -S8 s.ra ;\
$(TOOLDIR)/flip 7 s.ra sF.ra ;\
$(TOOLDIR)/conj sF.ra sFC.ra ;\
$(TOOLDIR)/join 13 s.ra sFC.ra ss.ra ;\
$(TOOLDIR)/pics -t t.ra -M kk.ra ss.ra x.ra ;\
$(TOOLDIR)/slice 13 0 x.ra x0.ra ;\
$(TOOLDIR)/slice 13 1 x.ra x1.ra ;\
$(TOOLDIR)/phantom -k rk.ra ;\
$(TOOLDIR)/conj rk.ra rkc.ra ;\
$(TOOLDIR)/fft -i 7 rk.ra r0.ra ;\
$(TOOLDIR)/fft -i 7 rkc.ra r1.ra ;\
$(TOOLDIR)/join 13 r0.ra r1.ra r.ra ;\
$(TOOLDIR)/nrmse -s -t 0.15 r.ra x.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
# Without limiting the number of threads, this takes a very long time. The process appears
# to sleep for most of it, so it seems to be parallelization overhead.
tests/test-pics-lowmem: traj phantom repmat ones pics nrmse
set +e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
export OMP_NUM_THREADS=4 ;\
$(TOOLDIR)/traj -x 16 -y 3 -D -r t.ra ;\
$(TOOLDIR)/phantom -tt.ra -k k0.ra ;\
$(TOOLDIR)/repmat 5 200 k0.ra k1.ra ;\
$(TOOLDIR)/repmat 6 200 k1.ra k2.ra ;\
$(TOOLDIR)/ones 2 4 4 s.ra ;\
if [ $(( 100 * `$(TOOLDIR)/tests/print_max_rss.sh $(TOOLDIR)/pics -U -tt.ra k2.ra s.ra r1.ra` )) -ge \
$(( 75 * `$(TOOLDIR)/tests/print_max_rss.sh $(TOOLDIR)/pics -tt.ra k2.ra s.ra r2.ra` )) ] ; then \
echo "-U/--lowmem failed to reduce memory usage!" ;\
false ;\
fi ;\
$(TOOLDIR)/nrmse -t 0.0005 r1.ra r2.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-psf: traj phantom pics nrmse
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/traj -r -D -y15 -o2. traj.ra ;\
$(TOOLDIR)/phantom -t traj.ra ksp.ra ;\
$(TOOLDIR)/phantom -S1 o.ra ;\
$(TOOLDIR)/pics -S -r0.001 --psf_export=p.ra -t traj.ra ksp.ra o.ra reco1.ra ;\
$(TOOLDIR)/pics -S -r0.001 --psf_import=p.ra -t traj.ra ksp.ra o.ra reco2.ra ;\
$(TOOLDIR)/nrmse -t 0.005 reco1.ra reco2.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-tgv: phantom slice noise fft ones pics tgv slice nrmse
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/phantom -s2 x.ra ;\
$(TOOLDIR)/slice 3 0 x.ra x0.ra ;\
$(TOOLDIR)/noise -n 1000000. x0.ra x0n.ra ;\
$(TOOLDIR)/fft -u 3 x0n.ra k0n.ra ;\
$(TOOLDIR)/ones 2 128 128 o.ra ;\
$(TOOLDIR)/pics -w1. -i100 -u0.1 -S -RG:3:0:750. k0n.ra o.ra x.ra ;\
$(TOOLDIR)/tgv 750 3 x0n.ra xg.ra ;\
$(TOOLDIR)/slice 15 0 xg.ra xg0.ra ;\
$(TOOLDIR)/nrmse -t 0.000001 xg0.ra x.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
tests/test-pics-tgv2: phantom slice noise fft ones pics tgv slice nrmse
set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\
$(TOOLDIR)/phantom -s2 x.ra ;\
$(TOOLDIR)/slice 3 0 x.ra x0.ra ;\
$(TOOLDIR)/noise -n 1000000. x0.ra x0n.ra ;\
$(TOOLDIR)/fft -u 3 x0n.ra k0n.ra ;\
$(TOOLDIR)/ones 2 128 128 o.ra ;\
$(TOOLDIR)/pics -w1. -i100 -u0.1 -S -RG:3:0:375. -RG:3:0:375. k0n.ra o.ra x.ra ;\
$(TOOLDIR)/tgv 750 3 x0n.ra xg.ra ;\
$(TOOLDIR)/slice 15 0 xg.ra xg0.ra ;\
$(TOOLDIR)/nrmse -t 0.01 xg0.ra x.ra ;\
rm *.ra ; cd .. ; rmdir $(TESTS_TMP)
touch $@
TESTS += tests/test-pics-pi tests/test-pics-noncart tests/test-pics-cs tests/test-pics-pics
TESTS += tests/test-pics-poisson-wavl1 tests/test-pics-joint-wavl1 tests/test-pics-bpwavl1
TESTS += tests/test-pics-weights tests/test-pics-noncart-weights
TESTS += tests/test-pics-warmstart tests/test-pics-batch
TESTS += tests/test-pics-tedim tests/test-pics-bp-noncart
TESTS += tests/test-pics-basis tests/test-pics-basis-noncart tests/test-pics-basis-noncart-memory tests/test-pics-basis-noncart2
#TESTS += tests/test-pics-lowmem
TESTS += tests/test-pics-noncart-sms tests/test-pics-psf tests/test-pics-tgv tests/test-pics-tgv2
TESTS += tests/test-pics-wavl1-dau2 tests/test-pics-wavl1-cdf44 tests/test-pics-wavl1-haar
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