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bbmap 38.73+dfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: bullseye, sid
  • size: 25,348 kB
  • sloc: java: 251,947; sh: 14,227; python: 5,247; ansic: 2,074; perl: 96; makefile: 35

Folder: 38.73+dfsg-1

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d .. (parent)
d d rwxr-xr-x 134 .pc
d d rwxr-xr-x 4,096 config
d d rwxr-xr-x 4,096 current
d d rwxr-xr-x 4,096 debian
d d rwxr-xr-x 4,096 docs
d d rwxr-xr-x 4,096 jni
d d rwxr-xr-x 4,096 pipelines
d d rwxr-xr-x 4,096 pytools
d d rwxr-xr-x 4,096 resources
- - rwxr-xr-x 194 README.md
- - rwxr-xr-x 2,146 a_sample_mt.sh
- - rwxr-xr-x 2,674 addadapters.sh
- - rwxr-xr-x 1,661 addssu.sh
- - rwxr-xr-x 2,114 adjusthomopolymers.sh
- - rwxr-xr-x 1,477 analyzeaccession.sh
- - rwxr-xr-x 1,407 analyzegenes.sh
- - rwxr-xr-x 1,882 applyvariants.sh
- - rwxr-xr-x 6,399 bbcms.sh
- - rwxr-xr-x 2,828 bbcountunique.sh
- - rwxr-xr-x 19,468 bbduk.sh
- - rwxr-xr-x 1,439 bbest.sh
- - rwxr-xr-x 2,976 bbfakereads.sh
- - rwxr-xr-x 19,868 bbmap.sh
- - rwxr-xr-x 1,137 bbmapskimmer.sh
- - rwxr-xr-x 4,543 bbmask.sh
- - rwxr-xr-x 1,273 bbmerge-auto.sh
- - rwxr-xr-x 13,874 bbmerge.sh
- - rwxr-xr-x 10,064 bbnorm.sh
- - rwxr-xr-x 3,381 bbrealign.sh
- - rwxr-xr-x 396 bbrename.sh
- - rwxr-xr-x 456 bbsketch.sh
- - rwxr-xr-x 6,008 bbsplit.sh
- - rwxr-xr-x 3,344 bbsplitpairs.sh
- - rwxr-xr-x 392 bbstats.sh
- - rwxr-xr-x 517 bbversion.sh
- - rwxr-xr-x 1,873 bbwrap.sh
- - rwxr-xr-x 3,743 bloomfilter.sh
- - rwxr-xr-x 5,697 calcmem.sh
- - rwxr-xr-x 5,709 calctruequality.sh
- - rwxr-xr-x 2,040 callgenes.sh
- - rwxr-xr-x 2,378 callpeaks.sh
- - rwxr-xr-x 9,153 callvariants.sh
- - rwxr-xr-x 1,444 callvariants2.sh
- - rwxr-xr-x 11,691 clumpify.sh
- - rwxr-xr-x 1,841 commonkmers.sh
- - rwxr-xr-x 1,123 comparegff.sh
- - rwxr-xr-x 14,408 comparesketch.sh
- - rwxr-xr-x 2,298 comparevcf.sh
- - rwxr-xr-x 1,972 consect.sh
- - rwxr-xr-x 2,936 consensus.sh
- - rwxr-xr-x 2,311 countbarcodes.sh
- - rwxr-xr-x 1,199 countgc.sh
- - rwxr-xr-x 2,141 countsharedlines.sh
- - rwxr-xr-x 147 crossblock.sh
- - rwxr-xr-x 2,934 crosscontaminate.sh
- - rwxr-xr-x 3,012 cutgff.sh
- - rwxr-xr-x 2,069 cutprimers.sh
- - rwxr-xr-x 5,014 decontaminate.sh
- - rwxr-xr-x 8,981 dedupe.sh
- - rwxr-xr-x 1,353 dedupe2.sh
- - rwxr-xr-x 2,551 dedupebymapping.sh
- - rwxr-xr-x 7,523 demuxbyname.sh
- - rwxr-xr-x 8,263 demuxbyname2.sh
- - rwxr-xr-x 1,839 diskbench.sh
- - rwxr-xr-x 1,343 estherfilter.sh
- - rwxr-xr-x 1,629 explodetree.sh
- - rwxr-xr-x 1,885 fetchproks.sh
- - rwxr-xr-x 3,131 filterassemblysummary.sh
- - rwxr-xr-x 2,727 filterbarcodes.sh
- - rwxr-xr-x 2,621 filterbycoverage.sh
- - rwxr-xr-x 3,738 filterbyname.sh
- - rwxr-xr-x 2,417 filterbysequence.sh
- - rwxr-xr-x 4,062 filterbytaxa.sh
- - rwxr-xr-x 4,526 filterbytile.sh
- - rwxr-xr-x 2,586 filterlines.sh
- - rwxr-xr-x 1,926 filterqc.sh
- - rwxr-xr-x 2,621 filtersam.sh
- - rwxr-xr-x 1,477 filtersubs.sh
- - rwxr-xr-x 3,656 filtervcf.sh
- - rwxr-xr-x 2,353 fixgaps.sh
- - rwxr-xr-x 2,781 fungalrelease.sh
- - rwxr-xr-x 2,466 fuse.sh
- - rwxr-xr-x 846 gbff2gff.sh
- - rwxr-xr-x 1,259 getreads.sh
- - rwxr-xr-x 1,797 gi2ancestors.sh
- - rwxr-xr-x 2,998 gi2taxid.sh
- - rwxr-xr-x 1,934 gitable.sh
- - rwxr-xr-x 971 grademerge.sh
- - rwxr-xr-x 1,594 gradesam.sh
- - rwxr-xr-x 5,114 icecreamfinder.sh
- - rwxr-xr-x 1,050 icecreamgrader.sh
- - rwxr-xr-x 3,638 icecreammaker.sh
- - rwxr-xr-x 2,335 idmatrix.sh
- - rwxr-xr-x 1,750 idtree.sh
- - rwxr-xr-x 1,658 invertkey.sh
- - rwxr-xr-x 1,668 kapastats.sh
- - rwxr-xr-x 3,488 kcompress.sh
- - rwxr-xr-x 2,074 keepbestcopy.sh
- - rwxr-xr-x 1,161 khist.sh
- - rwxr-xr-x 5,820 kmercountexact.sh
- - rwxr-xr-x 2,637 kmercountmulti.sh
- - rwxr-xr-x 4,144 kmercoverage.sh
- - rwxr-xr-x 2,625 kmerfilterset.sh
- - rwxr-xr-x 2,607 kmerlimit.sh
- - rwxr-xr-x 2,618 kmerlimit2.sh
- - rwxr-xr-x 2,417 license.txt
- - rwxr-xr-x 2,689 lilypad.sh
- - rwxr-xr-x 1,538 loadreads.sh
- - rwxr-xr-x 2,298 loglog.sh
- - rwxr-xr-x 1,877 makechimeras.sh
- - rwxr-xr-x 2,279 makecontaminatedgenomes.sh
- - rwxr-xr-x 2,101 makepolymers.sh
- - rwxr-xr-x 1,732 mapPacBio.sh
- - rwxr-xr-x 1,561 matrixtocolumns.sh
- - rwxr-xr-x 1,018 mergeOTUs.sh
- - rwxr-xr-x 2,609 mergebarcodes.sh
- - rwxr-xr-x 1,365 mergepgm.sh
- - rwxr-xr-x 1,961 mergeribo.sh
- - rwxr-xr-x 993 mergesam.sh
- - rwxr-xr-x 3,344 mergesketch.sh
- - rwxr-xr-x 2,832 mergesorted.sh
- - rwxr-xr-x 2,556 msa.sh
- - rwxr-xr-x 3,336 mutate.sh
- - rwxr-xr-x 2,146 muxbyname.sh
- - rwxr-xr-x 2,126 partition.sh
- - rwxr-xr-x 1,738 phylip2fasta.sh
- - rwxr-xr-x 6,753 pileup.sh
- - rwxr-xr-x 2,736 plotflowcell.sh
- - rwxr-xr-x 1,893 plotgc.sh
- - rwxr-xr-x 2,812 postfilter.sh
- - rwxr-xr-x 933 printtime.sh
- - rwxr-xr-x 1,418 processfrag.sh
- - rwxr-xr-x 1,998 processhi-c.sh
- - rwxr-xr-x 926 processspeed.sh
- - rwxr-xr-x 1,489 randomgenome.sh
- - rwxr-xr-x 7,504 randomreads.sh
- - rwxr-xr-x 1,503 readlength.sh
- - rwxr-xr-x 1,521 readqc.sh
- - rwxr-xr-x 1,957 reducesilva.sh
- - rwxr-xr-x 14,074 reformat.sh
- - rwxr-xr-x 1,801 removebadbarcodes.sh
- - rwxr-xr-x 2,576 removecatdogmousehuman.sh
- - rwxr-xr-x 2,565 removehuman.sh
- - rwxr-xr-x 2,576 removehuman2.sh
- - rwxr-xr-x 2,960 removemicrobes.sh
- - rwxr-xr-x 1,321 removesmartbell.sh
- - rwxr-xr-x 3,571 rename.sh
- - rwxr-xr-x 1,710 renameimg.sh
- - rwxr-xr-x 2,978 repair.sh
- - rwxr-xr-x 2,558 replaceheaders.sh
- - rwxr-xr-x 3,322 representative.sh
- - rwxr-xr-x 393 rqcfilter.sh
- - rwxr-xr-x 13,682 rqcfilter2.sh
- - rwxr-xr-x 1,937 samtoroc.sh
- - rwxr-xr-x 11,245 seal.sh
- - rwxr-xr-x 11,801 sendsketch.sh
- - rwxr-xr-x 1,615 shred.sh
- - rwxr-xr-x 1,766 shrinkaccession.sh
- - rwxr-xr-x 2,366 shuffle.sh
- - rwxr-xr-x 2,309 shuffle2.sh
- - rwxr-xr-x 6,075 sketch.sh
- - rwxr-xr-x 3,547 sketchblacklist.sh
- - rwxr-xr-x 3,266 sketchblacklist2.sh
- - rwxr-xr-x 2,847 sortbyname.sh
- - rwxr-xr-x 2,735 splitbytaxa.sh
- - rwxr-xr-x 3,826 splitnextera.sh
- - rwxr-xr-x 1,071 splitsam.sh
- - rwxr-xr-x 978 splitsam4way.sh
- - rwxr-xr-x 990 splitsam6way.sh
- - rwxr-xr-x 3,878 stats.sh
- - rwxr-xr-x 2,396 statswrapper.sh
- - rwxr-xr-x 1,758 streamsam.sh
- - rwxr-xr-x 2,240 subsketch.sh
- - rwxr-xr-x 2,054 summarizecontam.sh
- - rwxr-xr-x 1,786 summarizecrossblock.sh
- - rwxr-xr-x 1,025 summarizemerge.sh
- - rwxr-xr-x 1,218 summarizequast.sh
- - rwxr-xr-x 1,620 summarizescafstats.sh
- - rwxr-xr-x 2,135 summarizeseal.sh
- - rwxr-xr-x 1,377 summarizesketch.sh
- - rwxr-xr-x 2,485 synthmda.sh
- - rwxr-xr-x 1,841 tadpipe.sh
- - rwxr-xr-x 12,422 tadpole.sh
- - rwxr-xr-x 1,659 tadwrapper.sh
- - rwxr-xr-x 3,141 taxonomy.sh
- - rwxr-xr-x 4,003 taxserver.sh
- - rwxr-xr-x 1,573 taxsize.sh
- - rwxr-xr-x 1,631 taxtree.sh
- - rwxr-xr-x 1,036 testfilesystem.sh
- - rwxr-xr-x 1,149 testformat.sh
- - rwxr-xr-x 4,804 testformat2.sh
- - rwxr-xr-x 2,084 tetramerfreq.sh
- - rwxr-xr-x 990 textfile.sh
- - rwxr-xr-x 2,786 translate6frames.sh
- - rwxr-xr-x 1,117 unicode2ascii.sh
- - rwxr-xr-x 1,304 unzip.sh
- - rwxr-xr-x 891 vcf2gff.sh
- - rwxr-xr-x 1,824 webcheck.sh