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package driver;
import dna.Data;
import dna.Gene;
public class CountRNAs {
public static void main(String[] args){
Data.GENOME_BUILD=Integer.parseInt(args[0]);
Data.GENE_MAP=args[1];
long coding=0;
long noncoding=0;
long pseudo=0;
for(byte chrom=1; chrom<=24; chrom++){
Gene[] genes=Data.getGenes(chrom);
for(Gene g : genes){
if(g.pseudo){
pseudo++;
}else if(g.untranslated){
noncoding++;
}else{
coding++;
}
}
}
System.out.println("Gene map: "+Data.GENE_MAP);
System.out.println("Pseudogenes: "+pseudo);
System.out.println("Translated Genes: "+coding);
System.out.println("Untranslated Genes: "+noncoding);
}
}
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