1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
|
package hmm;
import java.util.HashMap;
public class ProteinSummary {
public ProteinSummary(String name){
this.name=name;
}
/** Returns true if anything changed */
public boolean add(HMMSearchLine line){
Integer old=map.get(line.name);
if(old==null || old<line.length){
map.put(line.name, line.length);
return true;
}
return false;
}
/** Name of query sequence */
public final String name;
//This could alternatively be a map of names to lines, to include all data
/** Map of reference model name to hit length */
public HashMap<String, Integer> map=new HashMap<String, Integer>();
}
|
