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Source: bbmap
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
javahelper,
default-jdk,
libmpj-java,
rename
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/bbmap
Vcs-Git: https://salsa.debian.org/med-team/bbmap.git
Homepage: https://sourceforge.net/projects/bbmap/
Rules-Requires-Root: no
Package: bbmap
Architecture: all
Depends: ${java:Depends},
${misc:Depends}
Recommends: pigz
Description: short read aligner and other bioinformatic tools
BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling
arbitrarily large genomes with millions of scaffolds. Handles Illumina,
PacBio, 454, and other reads; very high sensitivity and tolerant of
errors and numerous large indels.
.
BBMap is multithreaded as well as the other tools bundled into this
package for instance:
.
BBNorm: Kmer-based error-correction and normalization tool.
.
Dedupe: Simplifies assemblies by removing duplicate or contained
subsequences that share a target percent identity.
.
Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam,
interleaved/paired, and ASCII-33/64, at over 500 MB/s.
.
BBDuk: Filters, trims, or masks reads with kmer matches to an
artifact/contaminant file.
Package: bbmap-jni
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Description: short read aligner and other bioinformatic tools - JNI library
BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling
arbitrarily large genomes with millions of scaffolds. Handles Illumina,
PacBio, 454, and other reads; very high sensitivity and tolerant of
errors and numerous large indels.
.
This package contains the architecture dependent library for the bbmap
tools.
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