File: ReadMe

package info (click to toggle)
bbmap 38.90%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 21,520 kB
  • sloc: java: 265,882; sh: 14,954; python: 5,247; ansic: 2,074; perl: 96; xml: 38; makefile: 37
file content (13 lines) | stat: -rwxr-xr-x 255 bytes parent folder | download | duplicates (4) 
1
2
3
4
5
6
7
8
9
10
11
12
13
 
The readqc standalone pipeline;
The filter standalone pipeline;

ex data:
12248.8.247376.CAGAGTG-ACACTCT.fastq.gz

ex run syntax:
% time filter.py -o OUTDIR -f FASTQ.gz --prod-type RNA --skip-blast
% readqc.py -o OUTDIR -f FASTQ.gz --skip-blast -html