package info
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Folder: jgi
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.. (parent) | |||
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- | rwxr-xr-x | 24,396 | AddAdapters.java |
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- | rwxr-xr-x | 16,776 | AdjustHomopolymers.java |
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- | rwxr-xr-x | 69,091 | AssemblyStats2.java |
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- | rwxr-xr-x | 1,622 | AssemblyStatsWrapper.java |
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- | rwxr-xr-x | 187,431 | BBDuk.java |
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- | rwxr-xr-x | 136,737 | BBDuk2.java |
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- | rwxr-xr-x | 37,248 | BBMask.java |
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- | rwxr-xr-x | 102,904 | BBMerge.java |
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- | rwxr-xr-x | 34,269 | BBMergeOverlapper.java |
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- | rwxr-xr-x | 38,927 | BBQC.java |
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- | rwxr-xr-x | 67,440 | CalcTrueQuality.java |
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- | rwxr-xr-x | 20,168 | CalcUniqueness.java |
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- | rwxr-xr-x | 34,299 | CallPeaks.java |
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- | rwxr-xr-x | 13,433 | Consect.java |
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- | rwxr-xr-x | 13,297 | CorrelateBarcodes.java |
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- | rwxr-xr-x | 12,537 | CountBarcodes.java |
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- | rwxr-xr-x | 11,326 | CountGC.java |
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- | rwxr-xr-x | 3,166 | CountUniqueness.java |
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- | rwxr-xr-x | 5,604 | CovStatsLine.java |
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- | rwxr-xr-x | 77,915 | CoveragePileup.java |
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- | rwxr-xr-x | 14,039 | CrossContaminate.java |
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- | rwxr-xr-x | 7,043 | CutPrimers.java |
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- | rwxr-xr-x | 23,124 | DecontaminateByNormalization.java |
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- | rwxr-xr-x | 202,346 | Dedupe.java |
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- | rwxr-xr-x | 196,790 | Dedupe2.java |
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- | rwxr-xr-x | 13,807 | DedupeByMapping.java |
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- | rwxr-xr-x | 164,588 | DedupeProtein.java |
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- | rwxr-xr-x | 19,634 | DemuxByName.java |
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- | rwxr-xr-x | 37,200 | DemuxByName2.java |
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- | rwxr-xr-x | 714 | Difference.java |
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- | rwxr-xr-x | 10,489 | FakeReads.java |
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- | rwxr-xr-x | 15,426 | FilterByCoverage.java |
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- | rwxr-xr-x | 23,823 | FilterBySequence.java |
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- | rwxr-xr-x | 3,548 | FilterReadsWithSubs.java |
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- | rwxr-xr-x | 15,234 | FindHiCJunctions.java |
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- | rwxr-xr-x | 20,190 | FindPrimers.java |
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- | rwxr-xr-x | 8,471 | FindPrimers_old.java |
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- | rwxr-xr-x | 492 | FindString.java |
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- | rwxr-xr-x | 15,057 | FungalRelease.java |
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- | rwxr-xr-x | 6,077 | FuseSequence.java |
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- | rwxr-xr-x | 22,790 | GatherKapaStats.java |
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- | rwxr-xr-x | 9,829 | GetReads.java |
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- | rwxr-xr-x | 8,229 | GradeMergedReads.java |
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- | rwxr-xr-x | 2,386 | GreedyBarCodeFinder.java |
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- | rwxr-xr-x | 9,111 | IdentityMatrix.java |
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- | rwxr-xr-x | 5,983 | Info.java |
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- | rwxr-xr-x | 30,087 | KExpand.java |
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- | rwxr-xr-x | 8,239 | KeepBestCopy.java |
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- | rwxr-xr-x | 34,076 | KmerCountExact.java |
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- | rwxr-xr-x | 15,780 | KmerCountMulti.java |
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- | rwxr-xr-x | 39,287 | KmerCoverage.java |
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- | rwxr-xr-x | 13,674 | KmerFilterSetMaker.java |
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- | rwxr-xr-x | 137,371 | KmerNormalize.java |
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- | rwxr-xr-x | 3,185 | KmerSample.java |
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- | rwxr-xr-x | 9,525 | MakeChimeras.java |
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- | rwxr-xr-x | 10,410 | MakeContaminatedGenomes.java |
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- | rwxr-xr-x | 7,708 | MakeLengthHistogram.java |
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- | rwxr-xr-x | 4,921 | MakePolymers.java |
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- | rwxr-xr-x | 13,882 | MergeBarcodes.java |
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- | rwxr-xr-x | 5,503 | MergeSam.java |
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- | rwxr-xr-x | 25,061 | MutateGenome.java |
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- | rwxr-xr-x | 30,091 | MutateGenome2.java |
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- | rwxr-xr-x | 2,561 | Orf.java |
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- | rwxr-xr-x | 14,521 | PartitionReads.java |
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- | rwxr-xr-x | 4,803 | PhylipToFasta.java |
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- | rwxr-xr-x | 143,477 | RQCFilter2.java |
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- | rwxr-xr-x | 8,479 | RQCFilterStats.java |
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- | rwxr-xr-x | 6,380 | RandomGenome.java |
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- | rwxr-xr-x | 36,219 | ReadKmerDepthDistribution.java |
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- | rwxr-xr-x | 1,699 | RedirectTest.java |
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- | rwxr-xr-x | 57,034 | ReformatReads.java |
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- | rwxr-xr-x | 2,614 | RemapQuality.java |
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- | rwxr-xr-x | 1,922 | RemoveBadBarcodes.java |
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- | rwxr-xr-x | 11,461 | RenameReads.java |
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- | rwxr-xr-x | 15,405 | ReplaceHeaders.java |
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- | rwxr-xr-x | 16,166 | RepresentativeSet.java |
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- | rwxr-xr-x | 15,254 | SamToEst.java |
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- | rwxr-xr-x | 109,071 | Seal.java |
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- | rwxr-xr-x | 9,316 | SealRefInfo.java |
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- | rwxr-xr-x | 12,076 | Shred.java |
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- | rwxr-xr-x | 5,400 | SmallKmerFrequency.java |
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- | rwxr-xr-x | 21,305 | SplitNexteraLMP.java |
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- | rwxr-xr-x | 25,458 | SplitPairsAndSingles.java |
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- | rwxr-xr-x | 4,103 | SplitSam4Way.java |
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- | rwxr-xr-x | 4,844 | SplitSam6Way.java |
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- | rwxr-xr-x | 2,338 | SplitSamFile.java |
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- | rwxr-xr-x | 973 | StringCount.java |
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- | rwxr-xr-x | 12,555 | SynthMDA.java |
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- | rwxr-xr-x | 8,374 | TestFilesystem.java |
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- | rwxr-xr-x | 38,922 | TestFormat.java |
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- | rwxr-xr-x | 12,938 | TetramerFrequencies.java |
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- | rwxr-xr-x | 13,178 | TranslateSixFrames.java |
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- | rwxr-xr-x | 4,050 | UnicodeToAscii.java |
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- | rwxr-xr-x | 7,826 | Unzip.java |