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# metadata.json file for filtering
{
"inputs": ["<seq_unit_name>"],
"metadata": {
"analysis_project_id" : [<analysis_project_id>],
"analysis_task_id" : [<analysis_task_id>],
"library_name": ["<library_name>"],
"sequencing_project_id": [<seq_project_id>],
"seq_unit_name" : ["<seq_unit_base_name>"],
"filter_product_type" : "<filter_method>",
"input_read_count": <input_read_count>,
"input_base_count" : <input_base_count>,
"filter_reads_count" : <filter_read_count>,
"filter_base_count" : <filter_base_count>,
"filter_reads_count_pct" : <filter_read_count_pct>,
"filter_base_count_pct" : <filter_base_count_pct>,
"bbtools_version" : "<bbtools_version>",
"filter_pipeline_version" : "<filter_pipeline_version>",
"rqc_filter_command" : "<rqc_filter_command>"
},
"outputs": [
{
"file": "<filter_fastq_file>",
"label": "filtered_fastq",
"metadata" : { "illumina_sdm_seq_unit_id" : <sdm_seq_unit_id>, "fastq_type" : "filtered" }
},
{
"file": "<filter_chaff_fastq_file>",
"label": "filtered_reads_chaff",
"metadata" : { "illumina_sdm_seq_unit_id" : <sdm_seq_unit_id> }
},
{
"file" : "<filter_txt_report>",
"label" : "filtered_report"
},
{
"file" : "<filter_txt_method>",
"label" : "filtered_methods_report"
},
{
"file" : "<filter_commands>",
"label" : "filter_commands"
}
]
}
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