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Description: add CPPFLAGS build options to support fortify source
Author: Étienne Mollier <emollier@debian.org>
Forwarded: not-needed
Last-Update: 2022-03-05
---
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
--- bbmap.orig/jni/makefile.linux
+++ bbmap/jni/makefile.linux
@@ -5,7 +5,7 @@
OBJ=BandedAlignerJNI.o MultiStateAligner11tsJNI.o BBMergeOverlapper.o IceCreamAlignerJNI.o
%.o: %.c
- $(CC) $(CFLAGS) $(INCS) -c -o $@ $<
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(INCS) -c -o $@ $<
libbbtoolsjni.so: $(OBJ)
$(CC) -o $@ $^ $(LDFLAGS)
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