1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
|
package barcode.stub;
import java.util.ArrayList;
import java.util.Collection;
import java.util.HashMap;
import barcode.Barcode;
import barcode.PCRMatrix;
import structures.ByteBuilder;
/**
* Abstract superclass for PCRMatrixProb variants.
*
* @author Brian Bushnell
* @date May 15, 2024
*
*/
public abstract class PCRMatrixProbAbstract extends PCRMatrix {
public PCRMatrixProbAbstract() {super(0, 0, 0, false);}
public static final boolean parseStatic(String arg, String a, String b){return false;}
public final static void postParseStatic(){}
@Override
public final boolean parse(String arg, String a, String b) {return false;}
@Override
public final void refine(Collection<Barcode> cb, long c) {}
@Override
public final HashMap<String, String> makeAssignmentMap(Collection<Barcode> cb, long x) {return null;}
@Override
public final void populateCounts(ArrayList<Barcode> list, long minCount) {}
@Override
public final void makeProbs() {}
@Override
public final void initializeData() {}
@Override
public final void populateUnexpected() {}
@Override
protected final boolean valid() {return false;}
@Override
public final Barcode findClosest(String s) {return null;}
@Override
public final ByteBuilder toBytesProb(ByteBuilder bb) {return null;}
public static final boolean clientside() {return true;}
}
|
