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package bin;
public class BinStats {
BinStats(){}
BinStats(Bin b){
id=b.id();
taxid=b.taxid;
if(taxid<1) {taxid=b.labelTaxid;}
size=b.size();
contigs=b.numContigs();
contam=b.contam;
complt=b.completeness;
badContigs=b.badContigs;
gc=b.gc();
depth=b.depth();
minDepth=b.minContigDepth();
maxDepth=b.maxContigDepth();
}
String type() {
return type(complt, contam);
}
static String type(float complt, float contam) {
if(contam<0.01 && complt>=0.99) {return "UHQ";}
if(contam<0.02 && complt>=0.95) {return "VHQ";}
if(contam<0.05 && complt>=0.90) {return "HQ";}
if(contam<0.10 && complt>=0.50) {return "MQ";}
if(contam<0.20 || complt<0.20) {return "VLQ";}
return "LQ";
}
int id;
int taxid;
long size;
int contigs;
int badContigs;
float contam;
float complt;
float gc;
float depth;
float minDepth, maxDepth;
}
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