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package bin;
import json.JsonObject;
import shared.LineParserS2;
import structures.ByteBuilder;
public class SketchRecord extends BinObject {
public SketchRecord(JsonObject hit) {
setFrom(hit);
}
public void setFrom(JsonObject hit) {
matches=hit.getLong("Matches").intValue();
ani=hit.getDouble("ANI").floatValue();
completeness=hit.getDouble("Complt").floatValue();
contam=hit.getDouble("Contam").floatValue();
taxid=hit.getLong("TaxID").intValue();
taxName=hit.getString("taxName");
genusTaxid=-1;//TODO, get from tree
}
public ByteBuilder toBytes() {
ByteBuilder bb=new ByteBuilder();
return appendTo(bb);
}
public ByteBuilder appendTo(ByteBuilder bb) {
bb.append("ANI: ").append(ani, 2);
bb.tab().append("Complt: ").append(completeness, 2);
bb.tab().append("Contam: ").append(contam, 2);
bb.tab().append("Matches: ").append(matches);
bb.tab().append("TaxID: ").append(taxid);
bb.tab().append("Name: ").append(shrink(taxName));
return bb;
}
private static String shrink(String n) {
if(n==null || n.length()<40) {return n;}
ByteBuilder bb=new ByteBuilder();
LineParserS2 lp=new LineParserS2(' ');
lp.set(n);
for(int i=0; i<4 && lp.hasMore(); i++) {
if(bb.length>0) {bb.space();}
bb.append(lp.parseString());
}
if(lp.hasMore()) {bb.append("...");}
return (bb.length()<n.length() ? bb.toString() : n);
}
int matches=-1;
float completeness=-1;
float contam=-1;
float ani=-1;
int taxid=-1;
int genusTaxid=-1;
String taxName=null;
}
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