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package clump;
public class KmerComparatorY extends KmerComparator2 {
private KmerComparatorY(){}
@Override
public int compare(ReadKey a, ReadKey b){
// assert(FlowcellCoordinate.spanTiles || Clump.forceSortXY);
if(a.kmer!=b.kmer){return a.kmer>b.kmer ? -1 : 1;} //Bigger kmers first...
if(a.kmerMinusStrand!=b.kmerMinusStrand){return a.kmerMinusStrand ? 1 : -1;}
if(a.position!=b.position){return a.position<b.position ? 1 : -1;}
if(Clump.opticalOnly){
if(a.lane!=b.lane){return a.lane-b.lane;}
if(!ReadKey.spanTilesY){
if(a.tile!=b.tile){return a.tile-b.tile;}
}
if(a.y!=b.y){return a.y-b.y;}
}
return 0;
}
static final KmerComparatorY comparator=new KmerComparatorY();
}
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