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package fileIO;
import java.io.File;
public class CompressFiles {
public static void main(String[] args){
for(String s : args){
if(s.equalsIgnoreCase("zip")){
zip=true;
gzip=false;
}else if(s.equalsIgnoreCase("gzip") || s.equalsIgnoreCase("gz")){
zip=false;
gzip=true;
}else{
compressFiles(s);
}
}
}
public static void compressFiles(String path){
File f=new File(path);
compressFiles(f);
}
public static void compressFiles(File path){
if(path.isDirectory()){
File[] array=path.listFiles();
for(File f : array){compressFiles(f);}
}else{
compress(path);
}
}
public static void compress(File in){
assert(in.exists());
assert(in.isFile());
String abs=in.getAbsolutePath();
// System.out.println("Considering "+abs);
if(abs.endsWith(".gz") || abs.endsWith(".zip") || abs.endsWith(".bz2")){return;}
// if(!abs.contains("custom_summary_") || !abs.endsWith("Gene_build36.txt")){return;} //TODO ***TEMPORARY***
System.err.println(abs);
// if(!abs.endsWith(".gvla")){return;} //TODO ***TEMPORARY***
// if(!abs.endsWith(".gvla") ||
// !(abs.contains("seqGene") || abs.contains("refGene") || abs.contains("unionGene"))){return;} //TODO ***TEMPORARY***
if(abs.toLowerCase().contains("familytree")){return;} //TODO ***TEMPORARY***
if(PRINT_7Z_BATCH){
//-mx=4 is fast; -mx=5 or 6 is slow; 7+ is very slow.
// System.out.println("C:"+Data.SLASH+"\"Program Files\""+Data.SLASH+"7-Zip"+Data.SLASH+"7z a -mx=4 "+abs+".zip "+abs);
System.out.println("C:\\\"Program Files\"\\7-Zip\\7z a -mx=4 "+abs+".gz "+abs);
}else{
System.out.println("Compressing "+abs+" to "+(zip ? "zip" : "gz"));
ReadWrite.copyFile(abs, abs+(zip ? ".zip" : ".gz"));
}
}
public static boolean zip=true;
public static boolean gzip=!zip;
public static boolean PRINT_7Z_BATCH=true;
}
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