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package jasper;
public class Comparison {
/**
* Object for storing sequence similarity values between two nodes
* @param queryID_ int Node ID of the primary query sequence.
* @param refID_ int Node ID of the reference sequence.
* @param identity_ double similarity value between both nodes.
*/
public Comparison(int queryID_, int refID_, double identity_) {
//Set the queryID as the input value
this.queryID = queryID_;
//Set the refID as the input value
this.refID = refID_;
//Set the identity as the input value
this.identity = identity_;
}
/**
* toString method to return the queryID, the refID and the similarity with some formatting.
*/
public String toString() {
return "Query node ID = " + queryID + ", Reference node ID = " + refID +
", Similarity identity = " + identity;
}
/**
* Current node/organism of focus.
*/
int queryID;
/**
* Node being compared to the queryID node.
*/
int refID;
/**
* Similarity between the queryID node and the refID node.
*/
double identity;
}
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