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package jasper;
public class NCBIComparison implements Comparable<NCBIComparison> {
/**
* Object for storing sequence similarity values between two nodes
* @param queryID_ int Node ID of the primary query sequence.
* @param refID_ int Node ID of the reference sequence.
* @param identity_ double similarity value between both nodes.
*/
public NCBIComparison(int queryID_, int refID_, double identity_) {
//Set the queryID as the input value
this.queryID = queryID_;
//Set the refID as the input value
this.refNodeID = refID_;
//Set the identity as the input value
this.identity = identity_;
}
/**
* toString method to return the queryID, the refID and the similarity with some formatting.
*/
public String toString() {
return "Query node ID = " + queryID + ", Reference node ID = " + refNodeID +
", Similarity identity = " + identity;
}
/**
* Allows sorting of Comparison objects in an ArrayList<Comparison>
*/
public int compareTo(NCBIComparison comparison){
//If the identity of this comparison is equal to another comparison, return 0.
if(identity == comparison.identity) {
return 0;
//but if the identity of this Comparison is greater than another, return 1.
}else if(identity < comparison.identity) {
return 1;
//The only remaining option is that the identity of this Comparison is less than another Comparison.
//Return -1
}else {
return -1;
}
}
/**
* Current node/organism of focus.
*/
int queryID;
/**
* Node being compared to the queryID node.
*/
int refNodeID;
/**
* Similarity between the queryID node and the refID node.
*/
double identity;
}
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