package info
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Folder: jgi
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.. (parent) | |||
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- | rwxr-xr-x | 24,061 | AddAdapters.java |
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- | rwxr-xr-x | 16,775 | AdjustHomopolymers.java |
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- | rwxr-xr-x | 2,267 | Assembly.java |
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- | rwxr-xr-x | 68,534 | AssemblyStats2.java |
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- | rwxr-xr-x | 3,866 | AssemblyStats3.java |
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- | rwxr-xr-x | 1,622 | AssemblyStatsWrapper.java |
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- | rwxr-xr-x | 194,042 | BBDuk.java |
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- | rwxr-xr-x | 37,072 | BBMask.java |
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- | rwxr-xr-x | 113,601 | BBMerge.java |
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- | rwxr-xr-x | 45,914 | BBMergeOverlapper.java |
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- | rwxr-xr-x | 38,871 | BBQC.java |
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- | rwxr-xr-x | 77,625 | CalcTrueQuality.java |
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- | rwxr-xr-x | 20,029 | CalcUniqueness.java |
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- | rwxr-xr-x | 38,453 | CallPeaks.java |
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- | rwxr-xr-x | 30,368 | CheckStrand.java |
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- | rwxr-xr-x | 54,834 | CheckStrand2.java |
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- | rwxr-xr-x | 13,432 | Consect.java |
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- | rwxr-xr-x | 25,357 | CountDuplicates.java |
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- | rwxr-xr-x | 25,008 | CountDuplicatesBuffered.java |
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- | rwxr-xr-x | 11,200 | CountGC.java |
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- | rwxr-xr-x | 3,134 | CountUniqueness.java |
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- | rwxr-xr-x | 5,564 | CovStatsLine.java |
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- | rwxr-xr-x | 81,647 | CoveragePileup.java |
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- | rwxr-xr-x | 70,249 | CoveragePileupMT.java |
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- | rwxr-xr-x | 118,427 | CrisprFinder.java |
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- | rwxr-xr-x | 13,997 | CrossContaminate.java |
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- | rwxr-xr-x | 7,003 | CutPrimers.java |
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- | rwxr-xr-x | 23,128 | DecontaminateByNormalization.java |
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- | rwxr-xr-x | 202,227 | Dedupe.java |
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- | rwxr-xr-x | 196,679 | Dedupe2.java |
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- | rwxr-xr-x | 13,807 | DedupeByMapping.java |
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- | rwxr-xr-x | 164,477 | DedupeProtein.java |
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- | rwxr-xr-x | 17,465 | DemuxByName.java |
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- | rwxr-xr-x | 45,656 | DemuxByName2.java |
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- | rwxr-xr-x | 714 | Difference.java |
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- | rwxr-xr-x | 10,432 | FakeReads.java |
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- | rwxr-xr-x | 15,258 | FilterByCoverage.java |
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- | rwxr-xr-x | 27,045 | FilterBySequence.java |
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- | rwxr-xr-x | 7,454 | FilterReadsWithSubs.java |
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- | rwxr-xr-x | 15,184 | FindHiCJunctions.java |
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- | rwxr-xr-x | 20,382 | FindPrimers.java |
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- | rwxr-xr-x | 8,417 | FindPrimers_old.java |
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- | rwxr-xr-x | 492 | FindString.java |
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- | rwxr-xr-x | 15,049 | FungalRelease.java |
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- | rwxr-xr-x | 6,278 | FuseSequence.java |
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- | rwxr-xr-x | 22,796 | GatherKapaStats.java |
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- | rwxr-xr-x | 9,734 | GetReads.java |
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- | rwxr-xr-x | 8,081 | GradeMergedReads.java |
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- | rwxr-xr-x | 2,417 | GreedyBarCodeFinder.java |
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- | rwxr-xr-x | 9,001 | IdentityMatrix.java |
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- | rwxr-xr-x | 5,929 | Info.java |
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- | rwxr-xr-x | 30,086 | KExpand.java |
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- | rwxr-xr-x | 8,182 | KeepBestCopy.java |
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- | rwxr-xr-x | 33,988 | KmerCountExact.java |
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- | rwxr-xr-x | 15,734 | KmerCountMulti.java |
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- | rwxr-xr-x | 38,990 | KmerCoverage.java |
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- | rwxr-xr-x | 13,674 | KmerFilterSetMaker.java |
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- | rwxr-xr-x | 136,806 | KmerNormalize.java |
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- | rwxr-xr-x | 3,185 | KmerSample.java |
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- | rwxr-xr-x | 9,475 | MakeChimeras.java |
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- | rwxr-xr-x | 10,278 | MakeContaminatedGenomes.java |
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- | rwxr-xr-x | 7,599 | MakeLengthHistogram.java |
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- | rwxr-xr-x | 4,920 | MakePolymers.java |
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- | rwxr-xr-x | 13,745 | MergeBarcodes.java |
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- | rwxr-xr-x | 5,501 | MergeSam.java |
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- | rwxr-xr-x | 24,967 | MutateGenome.java |
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- | rwxr-xr-x | 29,997 | MutateGenome2.java |
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- | rwxr-xr-x | 2,561 | Orf.java |
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- | rwxr-xr-x | 17,421 | PartitionReads.java |
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- | rwxr-xr-x | 4,745 | PhylipToFasta.java |
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- | rwxr-xr-x | 13,248 | PickSubset.java |
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- | rwxr-xr-x | 153,253 | RQCFilter2.java |
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- | rwxr-xr-x | 8,459 | RQCFilterStats.java |
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- | rwxr-xr-x | 6,378 | RandomGenome.java |
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- | rwxr-xr-x | 35,948 | ReadKmerDepthDistribution.java |
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- | rwxr-xr-x | 1,699 | RedirectTest.java |
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- | rwxr-xr-x | 58,847 | ReformatReads.java |
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- | rwxr-xr-x | 2,614 | RemapQuality.java |
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- | rwxr-xr-x | 1,922 | RemoveBadBarcodes.java |
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- | rwxr-xr-x | 14,240 | RenameReads.java |
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- | rwxr-xr-x | 15,404 | ReplaceHeaders.java |
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- | rwxr-xr-x | 16,096 | RepresentativeSet.java |
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- | rwxr-xr-x | 15,131 | SamToEst.java |
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- | rwxr-xr-x | 117,427 | Seal.java |
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- | rwxr-xr-x | 9,419 | SealRefInfo.java |
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- | rwxr-xr-x | 16,177 | Shred.java |
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- | rwxr-xr-x | 5,400 | SmallKmerFrequency.java |
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- | rwxr-xr-x | 21,083 | SplitNexteraLMP.java |
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- | rwxr-xr-x | 25,319 | SplitPairsAndSingles.java |
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- | rwxr-xr-x | 4,103 | SplitSam4Way.java |
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- | rwxr-xr-x | 4,844 | SplitSam6Way.java |
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- | rwxr-xr-x | 2,338 | SplitSamFile.java |
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- | rwxr-xr-x | 12,498 | SynthMDA.java |
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- | rwxr-xr-x | 8,306 | TestFilesystem.java |
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- | rwxr-xr-x | 40,642 | TestFormat.java |
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- | rwxr-xr-x | 12,881 | TetramerFrequencies.java |
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- | rwxr-xr-x | 13,120 | TranslateSixFrames.java |
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- | rwxr-xr-x | 21,099 | TrimContigs.java |
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- | rwxr-xr-x | 3,994 | UnicodeToAscii.java |
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- | rwxr-xr-x | 7,824 | Unzip.java |