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package sketch;
import shared.Tools;
import structures.AbstractBitSet;
public class CompareBuffer extends SketchObject{
public CompareBuffer(boolean makeBS){
if(makeBS){
cbs=AbstractBitSet.make(0, bitSetBits);
}else{
cbs=null;
}
}
void set(final int hits_, final int multiHits_, final int unique2_, final int unique3_, final int noHits_,
final int contamHits_, final int contam2Hits_, final int multiContamHits_,
final int queryDivisor_, final int refDivisor_, final int querySize_, final int refSize_,
final long depthSum_, final double depthSum2_, final long refHitSum_,
final int k1hits_, final int k1seenQ_, final int k1seenR_){
hits=hits_;
multiHits=multiHits_;
unique2=unique2_;
unique3=unique3_;
noHits=noHits_;
contamHits=contamHits_;
contam2Hits=contam2Hits_;
multiContamHits=multiContamHits_;
queryDivisor=queryDivisor_;
refDivisor=refDivisor_;
querySize=querySize_;
refSize=refSize_;
depthSum=depthSum_;
depthSum2=(float)depthSum2_;
refHitSum=refHitSum_;
hits1=k1hits_;
qSeen1=k1seenQ_;
rSeen1=k1seenR_;
}
void clear(){
hits=multiHits=0;
unique2=unique3=noHits=0;
contamHits=contam2Hits=multiContamHits=0;
refDivisor=queryDivisor=0;
refSize=querySize=0;
depthSum=0;
depthSum2=0;
refHitSum=0;
hits1=qSeen1=rSeen1=0;
}
float depth(){
return depthSum<1 ? 0 : depthSum/Tools.max(1.0f, hits);
}
float depth2(){
return depthSum2<=0 ? 0 : depthSum2/Tools.max(1.0f, hits);
}
float avgRefHits(){
return refHitSum<1 ? 0 : refHitSum/Tools.max(1.0f, hits);
}
/*--------------------------------------------------------------*/
@Override
public String toString(){
return "hits="+hits+", refDivisor="+refDivisor+", queryDivisor="+queryDivisor+", refSize="+refSize+", querySize="+querySize+
", contamHits="+contamHits+", contam2Hits="+contam2Hits+", multiContamHits="+multiContamHits+", depthSum="+depthSum+", depthSum2="+depthSum2+
", hits="+hits+", multiHits="+multiHits+", unique2="+unique2+", unique3="+unique3+", noHits="+noHits;
}
/*--------------------------------------------------------------*/
final float wkid(){
final int div=minDivisor();
return hits/(float)div;
}
final float kid(){
final int div=maxDivisor();
return hits/(float)div;
}
final float aniOld(){
float wkid=wkid();
final float ani=wkidToAni(wkid);
return ani;
}
final float ani(){
final float ani;
if(k2>0 && useToValue2){
float ani1=ani1();
float ani2=ani2();
// ani=0.5f*(ani1+ani2);
ani=0.5f*(Tools.max(0.9f*ani2, ani1)+Tools.max(0.8f*ani1, ani2));
// return (ani1*qSeen1+ani2*qSeen2())/queryDivisor;
}else{
ani=aniOld();
}
// System.err.println("ani="+ani+"aniOld="+aniOld()+", ani1="+ani1()+", ani2="+ani2()+", anid="+(float)aniDual()+"\n"
//// +"gf="+(float)gf+", wkid1="+wkid1+", wkid2="+wkid2+"\n"
// + "k1f="+k1Fraction()+", hits="+hits+", hits1="+hits1+", hits2="+hits2()+", qSeen1()="+qSeen1()+", rSeen1()="+rSeen1()+"\n"
// + "qSeen2()="+qSeen2()+", rSeen2()="+rSeen2()+", minDivisor1()="+minDivisor1()+", minDivisor2()="+minDivisor2()+"\n");
return ani;
}
final float wkid1(){
final int div=minDivisor1();
return hits1()/(float)div;
}
final float kid1(){
final int div=maxDivisor1();
return hits1()/(float)div;
}
final float ani1(){
float wkid=wkid1();
final float ani=wkidToAniExact(wkid, k);
return ani;
}
final float wkid2(){
final int div=minDivisor2();
return hits2()/(float)div;
}
final float kid2(){
final int div=maxDivisor2();
return hits2()/(float)div;
}
final float ani2(){
assert(k2>0);
float wkid=wkid2();
final float ani=wkidToAniExact(wkid, k2);
return ani;
}
final float aniDual(){
assert(k2>0);
float wkid1=wkid1();
float wkid2=wkid2();
float ratio=(wkid1/wkid2);
float exp=1f/(k-k2);//TODO - make this initialized
double ani=Math.pow(ratio, exp);
double gf=wkid2/Math.pow(ani, k2);
// System.err.println("ani="+ani()+"aniOld="+aniOld()+", ani1="+ani1()+", ani2="+ani2()+", anid="+(float)ani+"\n"
// +"gf="+(float)gf+", wkid1="+wkid1+", wkid2="+wkid2+"\n"
// + "k1f="+k1Fraction()+", hits="+hits+", hits1="+hits1+", hits2="+hits2()+", qSeen1()="+qSeen1()+", rSeen1()="+rSeen1()+"\n"
// + "qSeen2()="+qSeen2()+", rSeen2()="+rSeen2()+", minDivisor1()="+minDivisor1()+", minDivisor2()="+minDivisor2()+"\n");
return (float)ani;
}
/*--------------------------------------------------------------*/
int hits(){return hits;}
int multiHits(){return multiHits;}
int noHits(){return noHits;}
int unique2(){return unique2;}
int unique3(){return unique3;}
int contamHits(){return contamHits;}
int contam2Hits(){return contam2Hits;}
int multiContamHits(){return multiContamHits;}
int queryDivisor(){return queryDivisor;}
int refDivisor(){return refDivisor;}
int querySize(){return querySize;}
int refSize(){return refSize;}
long depthSum(){return depthSum;}
float depthSum2(){return depthSum2;}
long refHitSum(){return refHitSum;}
/*--------------------------------------------------------------*/
int hits1(){return hits1;}
int qSeen1(){return qSeen1;}
int rSeen1(){return rSeen1;}
int minDivisor1(){return Tools.max(1, Tools.min(qSeen1, rSeen1));}
int maxDivisor1(){return Tools.max(1, qSeen1, rSeen1);}
int hits2(){return hits-hits1;}
int qSeen2(){return queryDivisor-qSeen1;}
int rSeen2(){return refDivisor-rSeen1;}
int minDivisor2(){return Tools.max(1, Tools.min(qSeen2(), rSeen2()));}
int maxDivisor2(){return Tools.max(1, qSeen2(), rSeen2());}
/*--------------------------------------------------------------*/
//For WKID
int minDivisor(){return Tools.max(1, Tools.min(queryDivisor, refDivisor));}
//For KID
int maxDivisor(){return Tools.max(1, queryDivisor, refDivisor);}
int minSize(){return Tools.max(1, Tools.min(querySize, refSize));}
int maxSize(){return Tools.max(1, querySize, refSize);}
int uniqueHits(){return hits-multiHits;}
int uniqueContamHits(){return contamHits-multiContamHits;}
float k1Fraction(){
return qSeen1/Tools.max(queryDivisor, 1f);
}
/*--------------------------------------------------------------*/
private int hits;
private int multiHits;
private int noHits;
private int unique2;
private int unique3;
private int contamHits;
private int contam2Hits;
private int multiContamHits;
private int queryDivisor;
private int refDivisor;
private int querySize;
private int refSize;
private long depthSum;
private float depthSum2;
private long refHitSum;
private int hits1;
private int qSeen1;
private int rSeen1;
/*--------------------------------------------------------------*/
public final AbstractBitSet cbs; //Only for comparisons, not index
}
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