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package sort;
import stream.Read;
/**
* @author Brian Bushnell
* @date Oct 27, 2014
*
*/
public final class ReadComparatorID extends ReadComparator{
@Override
public int compare(Read r1, Read r2) {
return compareInner(r1, r2)*mult;
}
public static int compareInner(Read r1, Read r2) {
if(r1.numericID<r2.numericID){return -1;}
else if(r1.numericID>r2.numericID){return 1;}
int p1=r1.pairnum(), p2=r2.pairnum();
if(p1<p2){return -1;}
else if(p1>p2){return 1;}
return r1.id.compareTo(r2.id);
}
public static final ReadComparatorID comparator=new ReadComparatorID();
@Override
public void setAscending(boolean asc) {
mult=asc ? 1 : -1;
}
private int mult=1;
}
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