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package stream;
import java.util.ArrayList;
import java.util.concurrent.atomic.AtomicInteger;
import shared.Shared;
import structures.ListNum;
/**
* @author Brian Bushnell
* @date Jan 26, 2015
*
*/
public class ConcurrentReadOutputStreamD extends ConcurrentReadOutputStream{
/*--------------------------------------------------------------*/
/*---------------- Initialization ----------------*/
/*--------------------------------------------------------------*/
public ConcurrentReadOutputStreamD(ConcurrentReadOutputStream cros_, boolean master_){
super(cros_==null ? null : cros_.ff1, cros_==null ? null : cros_.ff2);
dest=cros_;
master=master_;
rank=Shared.MPI_RANK;
ranks=Shared.MPI_NUM_RANKS;
assert(master==(cros_!=null));
}
@Override
public synchronized void start(){
if(started){
System.err.println("Resetting output stream.");
throw new RuntimeException();
}
started=true;
if(master){
terminatedCount.set(0);
dest.start();
startThreads();
}
}
private void startThreads(){
assert(master);
for(int i=0; i<ranks; i++){
if(i!=rank){
ListenThread lt=new ListenThread(i);
lt.start();
}
}
}
/*--------------------------------------------------------------*/
/*---------------- Outer Methods ----------------*/
/*--------------------------------------------------------------*/
@Override
public synchronized void add(ArrayList<Read> list, long listnum){
if(master){
dest.add(list, listnum);
}else{
unicast(list, listnum, 0);
}
}
@Override
public void close(){
if(master){
int count=terminatedCount.incrementAndGet();
while(count<ranks){
synchronized(terminatedCount){
count=terminatedCount.intValue();
if(count<ranks){
try {
terminatedCount.wait(1000);
} catch (InterruptedException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
}
}
dest.close();
}else{
unicast(new ListNum<Read>(new ArrayList<Read>(1), -1), 0);
}
}
@Override
public void join(){
if(master){
dest.join();
broadcastJoin(true);
}else{
boolean b=listenForJoin();
assert(b);
}
}
@Override
public synchronized void resetNextListID(){
if(master){
dest.resetNextListID();
terminatedCount.set(0);
finishedSuccessfully=false;
}
}
@Override
public String fname(){
return ff1.name();
}
@Override
public boolean errorState(){
if(master){
return errorState || dest.errorState();
}else{
return errorState;
}
}
@Override
public boolean finishedSuccessfully(){
if(finishedSuccessfully){return true;}
synchronized(this){
if(finishedSuccessfully){return true;}
if(master){
finishedSuccessfully=dest.finishedSuccessfully();
broadcastFinishedSuccessfully(finishedSuccessfully);
}else{
finishedSuccessfully=listenFinishedSuccessfully();
}
}
return finishedSuccessfully;
}
/*--------------------------------------------------------------*/
/*---------------- Inner Methods ----------------*/
/*--------------------------------------------------------------*/
private void unicast(ArrayList<Read> list, long listnum, int i) {
unicast(new ListNum<Read>(list, listnum), i);
}
protected void unicast(ListNum<Read> ln, int i) {
if(verbose){System.err.println("crosD "+(master?"master":"slave ")+": Unicasting reads to "+i+".");}
assert(!master);
boolean success=false;
while(!success){
try {
//Do some MPI stuff
success=true;
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
throw new RuntimeException("TODO");
}
protected ListNum<Read> listen(int i){
if(verbose){System.err.println("crosD "+(master?"master":"slave ")+": Listening for reads from "+i+".");}
assert(master);
boolean success=false;
while(!success){
try {
//Do some MPI stuff
success=true;
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
throw new RuntimeException("TODO");
}
/**
* Slaves listen to master's finishedSuccessfully status.
*/
protected boolean listenFinishedSuccessfully() {
if(verbose){System.err.println("crosD "+(master?"master":"slave ")+": listenFinishedSuccessfully.");}
assert(!master);
boolean success=false;
while(!success){
try {
//Do some MPI stuff
success=true;
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
throw new RuntimeException("TODO");
}
/**
* Master reports finishedSuccessfully status to slaves.
*/
protected void broadcastFinishedSuccessfully(boolean b) {
if(verbose){System.err.println("crosD "+(master?"master":"slave ")+": broadcastFinishedSuccessfully.");}
assert(master);
boolean success=false;
while(!success){
try {
//Do some MPI stuff
success=true;
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
throw new RuntimeException("TODO");
}
/** Master tells slaves that 'join' was successful. */
protected void broadcastJoin(boolean b) {
if(verbose){System.err.println("crosD "+(master?"master":"slave ")+": broadcastJoin.");}
assert(master);
boolean success=false;
while(!success){
try {
//Do some MPI stuff
success=true;
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
throw new RuntimeException("TODO");
}
/** Slave listens to see that master 'join' was successful. */
protected boolean listenForJoin() {
if(verbose){System.err.println("crosD "+(master?"master":"slave ")+": listenForJoin.");}
assert(!master);
boolean success=false;
while(!success){
try {
//Do some MPI stuff
success=true;
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
throw new RuntimeException("TODO");
}
/*--------------------------------------------------------------*/
/*---------------- Inner Classes ----------------*/
/*--------------------------------------------------------------*/
private class ListenThread extends Thread{
ListenThread(int sourceNum_){
sourceNum=sourceNum_;
assert(sourceNum_!=rank);
assert(sourceNum>=0 && sourceNum<ranks);
}
@Override
public void run(){
assert(master);
ListNum<Read> ln=listen(sourceNum);
while(ln!=null && ln.id>=0){
dest.add(ln.list, ln.id);
ln=listen(sourceNum);
}
final int count=terminatedCount.addAndGet(1);
if(count>=ranks){
synchronized(terminatedCount){
terminatedCount.notify();
}
}
}
final int sourceNum;
}
/*--------------------------------------------------------------*/
/*---------------- Getters ----------------*/
/*--------------------------------------------------------------*/
@Override
public ReadStreamWriter getRS1(){return master ? dest.getRS1() : null;}
@Override
public ReadStreamWriter getRS2(){return master ? dest.getRS2() : null;}
/*--------------------------------------------------------------*/
/*---------------- Fields ----------------*/
/*--------------------------------------------------------------*/
protected final AtomicInteger terminatedCount=new AtomicInteger(0);
protected final ConcurrentReadOutputStreamD thisPointer=this;
/** Wrapped destination of reads. Null for slaves. */
protected ConcurrentReadOutputStream dest;
protected final boolean master;
protected final int rank, ranks;
}
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