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bbmap 39.20%2Bdfsg-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 26,024 kB
  • sloc: java: 312,743; sh: 18,099; python: 5,247; ansic: 2,074; perl: 96; makefile: 39; xml: 38

Folder: resources

d .. (parent)
- - rwxr-xr-x 333 16S_15mers.fa
- - rwxr-xr-x 7,854 16S_consensus_sequence.fa
- - rwxr-xr-x 42 18S_15mers.fa
- - rwxr-xr-x 13,196 18S_consensus_sequence.fa
- - rwxr-xr-x 168 23S_15mers.fa
- - rwxr-xr-x 11,680 23S_consensus_sequence.fa
- - rwxr-xr-x 613 5S_10mers.fa
- - rwxr-xr-x 613 5S_11mers.fa
- - rwxr-xr-x 1,354 5S_12mers.fa
- - rwxr-xr-x 3,147 5S_15mers.fa
- - rwxr-xr-x 416 5S_9mers.fa
- - rwxr-xr-x 528 5S_consensus_sequence.fa
- - rwxr-xr-x 30,429 Covid19_ref.fa
- - rwxr-xr-x 1,826 ITS_animal_consensus_sequence.fq
- - rwxr-xr-x 7,274 ITS_consensus_sequence.fq
- - rwxr-xr-x 1,187 ITS_fungi_consensus_sequence.fq
- - rwxr-xr-x 1,352 ITS_nonfungi_consensus_sequence.fq
- - rwxr-xr-x 1,625 ITS_other_consensus_sequence.fq
- - rwxr-xr-x 1,329 ITS_plant_consensus_sequence.fq
- - rwxr-xr-x 1,307 ITS_universal_consensus_sequence.fq
- - rwxr-xr-x 62 PacBioAdapter.fa
- - rwxr-xr-x 95,189 SIP_spikeins.fa.gz
- - rwxr-xr-x 14,255 adapters.fa
- - rwxr-xr-x 1,643 adapters_no_transposase.fa.gz
- - rwxr-xr-x 9,845 artic3.fasta
- - rwxr-xr-x 70,914 bbmerge.bbnet
- - rwxr-xr-x 1,233,863 blacklist_nt_merged.sketch
- - rwxr-xr-x 399,112 blacklist_prokprot_merged.sketch
- - rwxr-xr-x 1,166,092 blacklist_refseq_merged.sketch
- - rwxr-xr-x 210,994 blacklist_silva_merged.sketch
- - rwxr-xr-x 2,770 contents.txt
- - rwxr-xr-x 139 crelox.fa.gz
- - rwxr-xr-x 228,376 crispr.bbnet.gz
- - rwxr-xr-x 398,333 crisprs.fa.gz
- - rwxr-xr-x 2,599 entropy_k4_w150.tsv
- - rwxr-xr-x 894 favicon.ico
- - rwxr-xr-x 5,600 kapatags.L40.fa
- - rwxr-xr-x 15,409 lambda.fa.gz
- - rwxr-xr-x 60 lfpe.linker.fa.gz
- - rwxr-xr-x 15,494 lsu_15mers.fa
- - rwxr-xr-x 1,687 m16S_consensus_sequence.fa
- - rwxr-xr-x 1,915 m18S_consensus_sequence.fa
- - rwxr-xr-x 100,090 minorAlleleCount.txt
- - rwxr-xr-x 812,632 model.pgm
- - rwxr-xr-x 3,512 mtst.fa
- - rwxr-xr-x 755 nextera.fa.gz
- - rwxr-xr-x 124 nextera_LMP_adapter.fa.gz
- - rwxr-xr-x 117 nextera_LMP_linker.fa.gz
- - rwxr-xr-x 1,522 p16S_consensus_sequence.fa
- - rwxr-xr-x 3,088 pJET1.2.fa
- - rwxr-xr-x 1,825 phix174_ill.ref.fa.gz
- - rwxr-xr-x 1,821 phix2.fa.gz
- - rwxr-xr-x 297 phix_adapters.fa
- - rwxr-xr-x 130 phix_adapters.fa.gz
- - rwxr-xr-x 31 polyA.fa.gz
- - rwxr-xr-x 48 polya.fa
- - rwxr-xr-x 48 polyc.fa
- - rwxr-xr-x 48 polyg.fa
- - rwxr-xr-x 48 polyt.fa
- - rwxr-xr-x 65,889 primes.txt.gz
- - rwxr-xr-x 278,576 quickbin1D.bbnet
- - rwxr-xr-x 169,283 quickbin1D_all.bbnet
- - rwxr-xr-x 139,355 quickbinND.bbnet
- - rwxr-xr-x 169,033 quickbinND_all.bbnet
- - rwxr-xr-x 1,573 remote_files.txt
- - rwxr-xr-x 1,106 remote_files_old.txt
- - rwxr-xr-x 11,136 sample1.fq.gz
- - rwxr-xr-x 11,110 sample2.fq.gz
- - rwxr-xr-x 29,047 sequencing_artifacts.fa.gz
- - rwxr-xr-x 392 short.fa
- - rwxr-xr-x 58,472 shred4merFractions.tsv
- - rwxr-xr-x 147,164 ssu_15mers.fa
- - rwxr-xr-x 48,941 tRNA_10mers.fa
- - rwxr-xr-x 83,710 tRNA_11mers.fa
- - rwxr-xr-x 330,162 tRNA_15mers.fa
- - rwxr-xr-x 419,539 tRNA_16mers.fa
- - rwxr-xr-x 371 tRNA_consensus_sequence.fa
- - rwxr-xr-x 23,510 tax_server.html
- - rwxr-xr-x 269 truseq.fa.gz
- - rwxr-xr-x 646 truseq_rna.fa.gz