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bcbio 1.2.9-4
  • links: PTS, VCS
  • area: contrib
  • in suites: sid
  • size: 36,792 kB
  • sloc: python: 45,766; sh: 209; makefile: 159; xml: 129

Folder: automated

d .. (parent)
d d rwxr-xr-x 149 tool-data
- - rwxr-xr-x 29 coverage_transcripts-bam.bed
- - rwxr-xr-x 1,653 post_process-sample.yaml
- - rwxr-xr-x 378 run_info-atacseq.yaml
- - rwxr-xr-x 3,416 run_info-bam.yaml
- - rwxr-xr-x 292 run_info-bamclean.yaml
- - rwxr-xr-x 2,796 run_info-cancer.yaml
- - rwxr-xr-x 757 run_info-cancer2.yaml
- - rwxr-xr-x 268 run_info-cancer3.yaml
- - rwxr-xr-x 760 run_info-chipseq.yaml
- - rwxr-xr-x 1,447 run_info-cwl.yaml
- - rwxr-xr-x 2,668 run_info-empty.yaml
- - rw-r--r-- 355 run_info-ericscript.yaml
- - rwxr-xr-x 784 run_info-explant.yaml
- - rwxr-xr-x 449 run_info-fastrnaseq.yaml
- - rw-r--r-- 291 run_info-fusion.yaml
- - rw-r--r-- 819 run_info-fusion_S3.yaml
- - rwxr-xr-x 470 run_info-hisat2.yaml
- - rwxr-xr-x 1,660 run_info-joint.yaml
- - rwxr-xr-x 413 run_info-rnaseq-variantcall.yaml
- - rwxr-xr-x 724 run_info-rnaseq.yaml
- - rwxr-xr-x 1,085 run_info-scrnaseq.yaml
- - rwxr-xr-x 373 run_info-srnaseq_bowtie.yaml
- - rwxr-xr-x 405 run_info-srnaseq_star.yaml
- - rwxr-xr-x 1,654 run_info-star.yaml
- - rwxr-xr-x 310 run_info-stranded.yaml
- - rw-r--r-- 696 run_info-umi.yaml
- - rwxr-xr-x 960 run_info-variantcall.yaml
- - rw-r--r-- 1,704 run_info-variantcall_S3_1.yaml
- - rw-r--r-- 2,191 run_info-variantcall_S3_2.yaml
- - rwxr-xr-x 2,373 run_info.yaml
- - rwxr-xr-x 3,144 tool_data_table_conf.xml
- - rwxr-xr-x 294 universe_wsgi.ini
- - rwxr-xr-x 150 variant_regions-bam.bed
- - rwxr-xr-x 86 variant_regions-cancer.bed
- - rwxr-xr-x 29 variant_regions-priority.bed
- - rwxr-xr-x 31 variant_regions-variantcall.bed