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import os
from unittest import mock
import pytest
from bcbio import upload
from bcbio.rnaseq.ericscript import EricScriptConfig
@pytest.fixture
def exists(mocker):
yield mocker.patch.object(os.path, 'exists')
@pytest.fixture
def es_out_dir(mocker):
yield mocker.patch.object(EricScriptConfig, 'sample_out_dir')
def test_add_ericscript_files_does_nothing_if_oudir_doesnt_exist(
exists, es_out_dir):
exists.return_value = False
result = upload._maybe_add_ericscript_files(mock.Mock(), mock.Mock(), [])
assert result == []
def test_add_ericscript_files_appends_ES_data_to_out_if_outdir_exists(
exists, es_out_dir):
exists.return_value = True
result = upload._maybe_add_ericscript_files(mock.Mock(), mock.Mock(), [])
expected = [{
'path': es_out_dir,
'type': 'directory',
'ext': 'ericscript',
}]
assert result == expected
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