1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
|
##fileformat=VCFv4.3
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of reads supporting the allele">
##INFO=<ID=AD,Number=R,Type=Integer,Description="Number of reads supporting the allele">
##contig=<ID=1,assembly=b37,length=249250621>
##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B
1 150 . C T,A 59.2 PASS AD=0,0,0 GT:AD ./.:0,0,0 ./.:0,0,0
1 151 . C T,A 59.2 PASS AD=0,0,0 GT:AD 0/1:1,1,0 0/0:0,0,0
1 152 . C T,A 59.2 PASS AD=0,0,0 GT:AD 0/1:0,1,0 0/0:0,0,0
1 153 . C T,A 59.2 PASS AD=0,0,0 GT:AD 0/1:0,2,0 0/0:0,0,0
1 154 . C T,A 59.2 PASS AD=0,0,0 GT:AD 0/1:0,3,0 0/0:0,0,0
1 155 . C T,A 59.2 PASS AD=0,0,0 GT:AD 0/1:0,4,0 0/0:0,0,0
1 156 . C T,A 59.2 PASS AD=0,0,0 GT:AD 0/1:0,5,0 0/0:0,0,0
1 157 . C T,A 59.2 PASS AD=0,0,0 GT:AD 0/1:0,6,0 0/0:0,0,0
1 158 . C T,A 59.2 PASS AD=0,0,0 GT:AD 0/1:0,7,0 0/0:0,0,0
1 159 . C T,A 59.2 PASS AD=0,0,0 GT:AD 0/1:0,8,0 0/0:0,0,0
1 160 . C T,A 59.2 PASS AD=0,0,0 GT:AD 1/2:0,9,0 0/0:0,0,0
1 161 . C T,A 59.2 PASS AD=0,0,0 GT:AD 1/2:0,119,0 0/0:1,0,0
|
