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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=1,assembly=b37,length=249250621>
##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=X>
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic Depth">
##FORMAT=<ID=AF,Number=R,Type=Float,Description="Genotype likelihoods">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype likelihoods">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype likelihoods">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT B A
1 3000001 . C T . . . GT:AD:AF:PL:GL .:8,9:8,9:10,11,12:10,11,12 .:1,2:1,2:3,4:3,4
1 3000002 . C T . . . GT:AD:AF:PL:GL 0/1:10,12:10,12:10,13,15:10,13,15 1/0:1,3:1,3:1,4,6:1,4,6
1 3000003 . C CT,CTT . . . GT:AD:AF:PL:GL 0/1:4,.,5:4,.,5:4,.,.,5,.,6:4,.,.,5,.,6 1/0:1,.,2:1,.,2:1,.,.,2,.,3:1,.,.,2,.,3
X 3000001 . C T . . . GT:AD:AF:PL:GL .:8,9:8,9:10,11,12:10,11,12 .:1,2:1,2:3,4:3,4
X 3000002 . C T . . . GT:AD:AF:PL:GL 0/1:10,12:10,12:10,13,15:10,13,15 0:1,3:1,3:1,3:1,3
X 3000003 . C CT,CTT . . . GT:AD:AF:PL:GL 0/1:4,.,5:4,.,5:4,.,.,5,.,6:4,.,.,5,.,6 0:1,.,2:1,.,2:1,.,2:1,.,2
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