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#
# Definition of sets
# ID [2]id [3]tab-separated file names
# SN, Summary numbers
# SN [2]id [3]key [4]value
SN 0 number of samples: 2
SN 0 number of records: 18
SN 0 number of no-ALTs: 1
SN 0 number of SNPs: 5
SN 0 number of MNPs: 1
SN 0 number of indels: 9
SN 0 number of others: 2
SN 0 number of multiallelic sites: 6
SN 0 number of multiallelic SNP sites: 1
# # TSTV, transition/transversions:
# TSTV [2]id [3]ts [4]tv [5]ts/tv [6]ts (1st ALT) [7]tv (1st ALT) [8]ts/tv (1st ALT)
TSTV 0 3 2 1.50 3 1 3.00
# Sis, Singleton stats
# SiS [2]id [3]allele count [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable
SiS 0 1 3 1 2 0 0 0 0
# AF, Stats by non-reference allele frequency
# AF [2]id [3]allele frequency [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable
AF 0 0.000000 3 1 2 2 0 0 2
AF 0 0.490000 0 0 0 12 0 0 12
AF 0 0.740000 1 1 0 0 0 0 0
AF 0 0.990000 1 1 0 0 0 0 0
# IDD, InDel distribution
# IDD [2]id [3]length (deletions negative) [4]number of sites [5]number of genotypes [6]mean VAF
IDD 0 -10 1 0 .
IDD 0 -8 1 0 .
IDD 0 -4 3 0 .
IDD 0 -3 4 0 .
IDD 0 -2 1 0 .
IDD 0 -1 2 0 .
IDD 0 1 1 0 .
IDD 0 2 1 0 .
# ST, Substitution types
# ST [2]id [3]type [4]count
ST 0 A>C 0
ST 0 A>G 0
ST 0 A>T 0
ST 0 C>A 0
ST 0 C>G 0
ST 0 C>T 0
ST 0 G>A 3
ST 0 G>C 1
ST 0 G>T 1
ST 0 T>A 0
ST 0 T>C 0
ST 0 T>G 0
# DP, Depth distribution
# DP [2]id [3]bin [4]number of genotypes [5]fraction of genotypes (%) [6]number of sites [7]fraction of sites (%)
DP 0 60 0 0.000000 1 33.333333
DP 0 62 0 0.000000 2 66.666667
# QUAL, Stats by quality
# QUAL [2]id [3]Quality [4]number of SNPs [5]number of transitions (1st ALT) [6]number of transversions (1st ALT) [7]number of indels
QUAL 0 12.6 1 0 1 0
QUAL 0 12.9 0 0 0 1
QUAL 0 45.0 0 0 0 1
QUAL 0 59.2 1 1 0 0
QUAL 0 59.9 0 0 0 3
QUAL 0 60.2 1 1 0 0
QUAL 0 61.5 0 0 0 1
QUAL 0 79.0 0 0 0 1
QUAL 0 82.7 0 0 0 1
QUAL 0 90.6 1 1 0 0
QUAL 0 342.0 0 0 0 1
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