File: csq.1.out

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90	C	T	5_prime_utr|XYZ|ENST00000000001|protein_coding
90	C	T	5_prime_utr|XYZ|ENST00000000001|protein_coding

102	C	T	synonymous|XYZ|ENST00000000001|protein_coding|+|1Y|102C>T
102	C	T	synonymous|XYZ|ENST00000000001|protein_coding|+|1Y|102C>T

103	G	A	missense|XYZ|ENST00000000001|protein_coding|+|2V>2I|103G>A
103	G	A	missense|XYZ|ENST00000000001|protein_coding|+|2V>2I|103G>A

103	G	C	missense|XYZ|ENST00000000001|protein_coding|+|2V>2L|103G>C
103	G	C	missense|XYZ|ENST00000000001|protein_coding|+|2V>2L|103G>C

107	G	A	missense|XYZ|ENST00000000001|protein_coding|+|3R>3Q|107G>A+108T>A
107	G	A	missense|XYZ|ENST00000000001|protein_coding|+|3R>3Q|107G>A+108T>A

108	T	A	@107,splice_region|XYZ|ENST00000000001|protein_coding
108	T	A	@107,splice_region|XYZ|ENST00000000001|protein_coding

121	ACG	A	inframe_deletion|XYZ|ENST00000000001|protein_coding|+|5TY>5I|121ACG>A+124TA>T,splice_region|XYZ|ENST00000000001|protein_coding
121	ACG	A	inframe_deletion|XYZ|ENST00000000001|protein_coding|+|5TY>5I|121ACG>A+124TA>T,splice_region|XYZ|ENST00000000001|protein_coding

124	TA	T	@121
124	TA	T	@121

128	T	C	missense|XYZ|ENST00000000001|protein_coding|+|7V>6A|128T>C+129A>C,splice_region|XYZ|ENST00000000001|protein_coding
128	T	C	missense|XYZ|ENST00000000001|protein_coding|+|7V>6A|128T>C+129A>C,splice_region|XYZ|ENST00000000001|protein_coding

129	A	C	@128,splice_region|XYZ|ENST00000000001|protein_coding
129	A	C	@128,splice_region|XYZ|ENST00000000001|protein_coding

140	TA	AACG	inframe_insertion|XYZ|ENST00000000001|protein_coding|+|8LR>7QRR|140TA>AACG+142C>CC,splice_region|XYZ|ENST00000000001|protein_coding
140	TA	AACG	inframe_insertion|XYZ|ENST00000000001|protein_coding|+|8LR>7QRR|140TA>AACG+142C>CC,splice_region|XYZ|ENST00000000001|protein_coding

142	C	CC	@140,splice_region|XYZ|ENST00000000001|protein_coding
142	C	CC	@140,splice_region|XYZ|ENST00000000001|protein_coding

145	AC	TA	stop_gained|XYZ|ENST00000000001|protein_coding|+|10T>10*|145AC>TA
145	AC	TA	stop_gained|XYZ|ENST00000000001|protein_coding|+|10T>10*|145AC>TA

160	TA	T	*frameshift|XYZ|ENST00000000001|protein_coding|+|12YVRT>12SYV|160TA>T,splice_region|XYZ|ENST00000000001|protein_coding
160	TA	T	*frameshift|XYZ|ENST00000000001|protein_coding|+|12YVRT>12SYV|160TA>T,splice_region|XYZ|ENST00000000001|protein_coding

190	C	T	3_prime_utr|XYZ|ENST00000000001|protein_coding
190	C	T	3_prime_utr|XYZ|ENST00000000001|protein_coding

97	A	C	3_prime_utr|ABC|ENST00000000002|protein_coding
97	A	C	3_prime_utr|ABC|ENST00000000002|protein_coding

105	AC	A	@121
105	AC	A	@121

121	AC	A	frameshift|ABC|ENST00000000002|protein_coding|-|11VVRTY>11*|105AC>A+121AC>A,splice_region|ABC|ENST00000000002|protein_coding
121	AC	A	splice_region|ABC|ENST00000000002|protein_coding,stop_gained&frameshift|ABC|ENST00000000002|protein_coding|-|11VVRTY>11*|105AC>A+121AC>A

126	C	CTT	@127
126	C	CTT	@127

127	G	GG	inframe_insertion|ABC|ENST00000000002|protein_coding|-|9T>8TK|126C>CTT+127G>GG
127	G	GG	inframe_insertion|ABC|ENST00000000002|protein_coding|-|9T>8TK|126C>CTT+127G>GG

144	TAC	T	@148
144	TAC	T	@148

148	TA	T	inframe_deletion|ABC|ENST00000000002|protein_coding|-|5YV>5T|144TAC>T+148TA>T,splice_region|ABC|ENST00000000002|protein_coding
148	TA	T	inframe_deletion|ABC|ENST00000000002|protein_coding|-|5YV>5T|144TAC>T+148TA>T,splice_region|ABC|ENST00000000002|protein_coding

164	T	G	missense|ABC|ENST00000000002|protein_coding|-|3T>3P|164T>G
164	T	G	missense|ABC|ENST00000000002|protein_coding|-|3T>3P|164T>G

165	A	C	synonymous|ABC|ENST00000000002|protein_coding|-|2R|165A>C
165	A	C	synonymous|ABC|ENST00000000002|protein_coding|-|2R|165A>C

169	A	G	@170
169	A	G	@170

170	C	T	missense|ABC|ENST00000000002|protein_coding|-|1V>1T|169A>G+170C>T
170	C	T	missense|ABC|ENST00000000002|protein_coding|-|1V>1T|169A>G+170C>T

199	G	T	5_prime_utr|ABC|ENST00000000002|protein_coding
199	G	T	5_prime_utr|ABC|ENST00000000002|protein_coding

20	T	A	non_coding|mir-007||lincRNA
20	T	A	non_coding|mir-007||lincRNA

109	ACGTACGT	A	splice_acceptor|QWRTY|ENST00000000003|protein_coding
109	ACGTACGT	A	splice_acceptor|QWRTY|ENST00000000003|protein_coding

113	A	T	splice_region|QWRTY|ENST00000000003|protein_coding
113	A	T	splice_region|QWRTY|ENST00000000003|protein_coding

120	T	A	intron|QWRTY||protein_coding
120	T	A	intron|QWRTY||protein_coding

152	T	A	splice_region|QWRTY|ENST00000000003|protein_coding
152	T	A	splice_region|QWRTY|ENST00000000003|protein_coding

159	G	A	splice_donor|QWRTY|ENST00000000003|protein_coding
159	G	A	splice_donor|QWRTY|ENST00000000003|protein_coding