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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=chr1,length=249250621,assembly=hg19>
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele frequency">
##INFO=<ID=F_MISSING,Number=.,Type=Float,Description="Added by +fill-tags expression F_MISSING=F_MISSING">
##INFO=<ID=AC_Hom,Number=A,Type=Integer,Description="Allele counts in homozygous genotypes">
##INFO=<ID=AC_Het,Number=A,Type=Integer,Description="Allele counts in heterozygous genotypes">
##INFO=<ID=AC_Hemi,Number=A,Type=Integer,Description="Allele counts in hemizygous genotypes">
##INFO=<ID=MAF,Number=1,Type=Float,Description="Frequency of the second most common allele">
##INFO=<ID=HWE,Number=A,Type=Float,Description="HWE test (PMID:15789306); 1=good, 0=bad">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant">
##INFO=<ID=TYPE,Number=.,Type=String,Description="Variant type">
##INFO=<ID=ExcHet,Number=A,Type=Float,Description="Test excess heterozygosity; 1=good, 0=bad">
##FORMAT=<ID=VAF,Number=A,Type=Float,Description="The fraction of reads with alternate allele (nALT/nSumAll)">
##FORMAT=<ID=VAF1,Number=1,Type=Float,Description="The fraction of reads with alternate alleles (nSumALT/nSumAll)">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMP_A SAMP_B SAMP_C SAMP_E
chr1 10146 . AC A . PASS NS=2;AN=4;AF=0.5;AC=2;F_MISSING=0.5;MAF=0.5;AC_Het=2;AC_Hom=0;AC_Hemi=0;HWE=1;ExcHet=0.666667;END=10147;TYPE=INDEL GT ./. 0/1 ./. 0/1
chr1 10153 . A C . PASS NS=0;AN=0;AF=.;AC=0;F_MISSING=1;MAF=.;AC_Het=0;AC_Hom=0;AC_Hemi=0;HWE=1;ExcHet=1;END=10153;TYPE=SNP GT ./. ./. ./. ./.
chr1 10154 . C G . PASS NS=0;AN=0;AF=.;AC=0;F_MISSING=1;MAF=.;AC_Het=0;AC_Hom=0;AC_Hemi=0;HWE=1;ExcHet=1;END=10154;TYPE=SNP GT ./. ./. ./. ./.
chr1 10172 . C A . PASS NS=3;AN=6;AF=0;AC=0;F_MISSING=0.25;MAF=0;AC_Het=0;AC_Hom=0;AC_Hemi=0;HWE=1;ExcHet=1;END=10172;TYPE=SNP GT 0/0 0/0 0/0 ./.
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