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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=1,assembly=b37,length=249250621>
##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
##INFO=<ID=F_MISSING,Number=.,Type=Float,Description="Added by +fill-tags expression F_MISSING=F_MISSING">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
##INFO=<ID=AC_Hom,Number=A,Type=Integer,Description="Allele counts in homozygous genotypes">
##INFO=<ID=AC_Het,Number=A,Type=Integer,Description="Allele counts in heterozygous genotypes">
##INFO=<ID=AC_Hemi,Number=A,Type=Integer,Description="Allele counts in hemizygous genotypes">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele frequency">
##INFO=<ID=MAF,Number=1,Type=Float,Description="Frequency of the second most common allele">
##INFO=<ID=HWE,Number=A,Type=Float,Description="HWE test (PMID:15789306); 1=good, 0=bad">
##INFO=<ID=ExcHet,Number=A,Type=Float,Description="Test excess heterozygosity; 1=good, 0=bad">
##FORMAT=<ID=VAF,Number=A,Type=Float,Description="The fraction of reads with alternate allele (nALT/nSumAll)">
##FORMAT=<ID=VAF1,Number=1,Type=Float,Description="The fraction of reads with alternate alleles (nSumALT/nSumAll)">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B
1 3177144 . G T,A 45 PASS F_MISSING=0;NS=2;AN=2;AF=0.5,0.5;MAF=0.5;AC=1,1;AC_Het=0,0;AC_Hom=0,0;AC_Hemi=1,1;HWE=1,1;ExcHet=1,1 GT 1 2
1 3177144 . G T 45 PASS F_MISSING=1;NS=2;AN=2;AF=0.5;MAF=0.5;AC=1;AC_Het=0;AC_Hom=0;AC_Hemi=1;HWE=1;ExcHet=1 GT 0/. 1/.
1 3177144 . G T 45 PASS F_MISSING=1;NS=2;AN=2;AF=0.5;MAF=0.5;AC=1;AC_Het=0;AC_Hom=0;AC_Hemi=1;HWE=1;ExcHet=1 GT ./0 ./1
1 3177144 . G T 45 PASS F_MISSING=1;NS=1;AN=1;AF=1;MAF=0;AC=1;AC_Het=0;AC_Hom=0;AC_Hemi=1;HWE=1;ExcHet=1 GT ./. ./1
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