File: fisher.2.out

package info (click to toggle)
bcftools 1.22-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 22,792 kB
  • sloc: ansic: 72,978; perl: 7,583; sh: 694; python: 595; makefile: 301
file content (14 lines) | stat: -rw-r--r-- 1,232 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="All filters passed">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=ADF,Number=R,Type=Integer,Description="Allelic depths on the forward strand">
##INFO=<ID=ADR,Number=R,Type=Integer,Description="Allelic depths on the reverse strand">
##FORMAT=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Allelic depths on the forward strand">
##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Allelic depths on the reverse strand">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=1,assembly=b37,length=249250621>
##INFO=<ID=FT,Number=1,Type=Float,Description="Added by +fill-tags expression FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A
1	3062915	.	G	A,T	.	.	DP4=10,20,30,40;ADF=10,10,20;ADR=20,10,30;FT=1.96028	GT:DP4:ADF:ADR	0/2:10,20,30,40:10,10,20:20,10,30
1	3062915	.	G	A,T	.	.	DP4=10,20,30,40;ADF=10,10,20;ADR=20,10,30;FT=1.96028	GT:DP4:ADF:ADR	0/0:10,20,30,40:10,10,20:20,10,30