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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=1>
##contig=<ID=2>
##contig=<ID=3>
##contig=<ID=4>
##contig=<ID=5>
##contig=<ID=6>
##contig=<ID=7>
##contig=<ID=8>
##INFO=<ID=FIXREF,Number=.,Type=String,Description="The change made by bcftools/fixref">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE
1 11 rs1535632 A T . . FIXREF=flip,swap,GT GT 1/1
2 11 rs363334 C G . . FIXREF=none GT 0/0
3 11 rs7101540 A T . . FIXREF=none GT 0/0
4 11 rs7113791 A T . . FIXREF=flip,swap,GT GT 1/1
5 11 rs778833 C G . . FIXREF=flip,swap,GT GT 1/1
6 11 rs4933195 A T . . FIXREF=none GT 0/0
7 11 rs903997 C G . . FIXREF=none GT 0/0
8 11 rs1942968 C G . . FIXREF=flip,swap,GT GT 1/1
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