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##fileformat=VCFv4.1
##reference=file:///some/path/1000GenomesPilot-NCBI36.fasta
##contig=<ID=1,length=249250621>
##contig=<ID=11,length=135006516>
##contig=<ID=20,length=63025520>
##contig=<ID=X,length=155270560>
##contig=<ID=Y,length=59373566>
#CHROM POS ID REF ALT QUAL FILTER INFO
11 2343543 . A . 999 PASS .
11 5464562 . C T 999 PASS .
20 76962 . T C 999 PASS .
20 126310 . ACC A 999 PASS .
20 138125 . G T 999 PASS .
20 138148 . C T 999 PASS .
20 271225 . T TTTA,TA 999 PASS .
20 304568 . C T 999 PASS .
20 326891 . A AC 999 PASS .
X 2928329 . C T 999 PASS .
X 2933066 . G C 999 PASS .
X 2942109 . T C 999 PASS .
X 3048719 . T C 999 PASS .
Y 8657215 . C A 999 PASS .
Y 10011673 . G A 999 PASS .
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