1 2 3 4 5 6 7 8 9 10 11
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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=20,length=81195210>
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths">
##INFO=<ID=CSQ,Number=.,Type=String,Description="Local consequence annotation from BCFtools/csq. Format: '[*]consequence|gene|transcript|biotype[|strand|amino_acid_change|dna_change]'">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT child1 father1 mother1 child2 father2 mother2
20 310 . T A,C . . . GT 1/1 1/1 1/1 1/2 2/1 1/1
20 311 . T TA . . . GT:AD 1/1:0,20 0/0:20,0 0/0:20,0 0/1:10,10 . 0/0:20,0
20 312 . TAA T . . CSQ=inframe_deletion|SAMD11|ENST00000420190|protein_coding|+|74EDG>74D|865683AGGATGG>A GT:AD 0/1:10,10 1/0:10,10 0/0:20,0 0/0:20,0 0/0:20,0 0/0:20,0
20 313 . A ATT . . CSQ=frameshift|SAMD11|ENST00000342066|protein_coding|+|333LPPAQA GT:AD 0/1:10,10 0/0:10,10 0/0:20,0 0/0:20,0 0/0:20,0 0/0:20,0
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