File: many.alleles.vcf

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##fileformat=VCFv4.1
##reference=file:///some/path/1000GenomesPilot-NCBI36.fasta
##contig=<ID=chr7>
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SRR1528791
chr7	142459798	.	CCATCTCTCTGCCCA	CCATCTCTCTCCCCC,CCATCTCTCTCCCCG,CCTTCTCTCTGCCCC,CCCTCTCTCTCCCCC,CCACCTCTCTGCCCC,CCACCCCTCTGCCCA,CCACCTCCCTCCCCC,CCACCTCCCTGCCCA,CCACCTCTCGGCCCC,CCACCTCTCGGCCCA,CCACCTCTCTCCCCC,CCACCTCTCTCCCCA,CCATCCCCCTCCCCC,CCATCCCCCTGCCCC,CCATCCCCCTGCCCA,CCATCCCTCGGCCCC,CCATCCCTCGGCCCA,CCATCCCTCTCCCCC,CCATCCCTCTCCCCA,CCATCCCTCTGCCCC,CCATCTCCCGGCCCC,CCATCTCCCGGCCCA,CCATCTCCCGCCCCC,CCATCTCCCTCCCCC,CCATCTCCCTCCCCA,CCATCTCCCTGCCCC,CCATCTCTCGGCCCC,CCATCTCTCCCCCCC,CCATCTCTCGCCCCC,CCATCTCTGGGCCCA,CCATCTCTCCCCCCA,CCATCTCTCGCCCCA,CCATCTCTCTCCCCA	.	.	.	GT	2/2
chr7	142459798	.	CCATCTCTCTGCCCA	CCATCTCTCTCCCCC,CCATCTCTCTCCCCG,CCTTCTCTCTGCCCC,CCCTCTCTCTCCCCC,CCACCTCTCTGCCCC,CCACCCCTCTGCCCA,CCACCTCCCTCCCCC,CCACCTCCCTGCCCA,CCACCTCTCGGCCCC,CCACCTCTCGGCCCA,CCACCTCTCTCCCCC,CCACCTCTCTCCCCA,CCATCCCCCTCCCCC,CCATCCCCCTGCCCC,CCATCCCCCTGCCCA,CCATCCCTCGGCCCC,CCATCCCTCGGCCCA,CCATCCCTCTCCCCC,CCATCCCTCTCCCCA,CCATCCCTCTGCCCC,CCATCTCCCGGCCCC,CCATCTCCCGGCCCA,CCATCTCCCGCCCCC,CCATCTCCCTCCCCC,CCATCTCCCTCCCCA,CCATCTCCCTGCCCC,CCATCTCTCGGCCCC,CCATCTCTCCCCCCC,CCATCTCTCGCCCCC,CCATCTCTGGGCCCA,CCATCTCTCCCCCCA,CCATCTCTCGCCCCA,CCATCTCTCTCCCCA,CCTTCTCTCTGCCCC	.	.	.	GT	2/2
chr7	142459798	.	CCATCTCTCTGCCCA	CCATCTCTCTCCCCC,CCATCTCTCTCCCCG,CCTTCTCTCTGCCCC,CCCTCTCTCTCCCCC,CCACCTCTCTGCCCC,CCACCCCTCTGCCCA,CCACCTCCCTCCCCC,CCACCTCTCGGCCCC,CCACCTCTCGGCCCA,CCACCTCTCTCCCCC,CCACCTCTCTCCCCA,CCATCCCCCTCCCCC,CCATCCCCCTGCCCC,CCATCCCCCTGCCCA,CCATCCCTCGGCCCC,CCATCCCTCGGCCCA,CCATCCCTCTCCCCC,CCATCCCTCTCCCCA,CCATCCCTCTGCCCC,CCATCTCCCGGCCCC,CCATCTCCCGGCCCA,CCATCTCCCGCCCCC,CCATCTCCCTCCCCC,CCATCTCCCTCCCCA,CCATCTCCCTGCCCC,CCATCTCTCGGCCCC,CCATCTCTCCCCCCC,CCATCTCTCGCCCCC,CCATCTCTGGGCCCA,CCATCTCTCCCCCCA,CCATCTCTCGCCCCA,CCATCTCTCTCCCCA,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC,CCTTCTCTCTGCCCC	.	.	.	GT	2/2