File: mendelian.vcf

package info (click to toggle)
bcftools 1.22-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 22,792 kB
  • sloc: ansic: 72,978; perl: 7,583; sh: 694; python: 595; makefile: 301
file content (41 lines) | stat: -rw-r--r-- 1,369 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
##fileformat=VCFv4.2
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=1>
##contig=<ID=2>
##contig=<ID=3>
##contig=<ID=4>
##contig=<ID=5>
##contig=<ID=6>
##contig=<ID=X>
##contig=<ID=Y>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	mom1	dad1	child1
1	100	.	A	G	100	PASS	.	GT	0/0	0/0	0/0
1	101	.	A	G	100	PASS	.	GT	0/0	0/0	0/1
1	102	.	A	G	100	PASS	.	GT	0/0	0/0	1/1
1	103	.	A	G	100	PASS	.	GT	./.	0/0	1/1
1	104	.	A	G	100	PASS	.	GT	.	0/0	1/1
1	105	.	A	G	100	PASS	.	GT	.	0/0	0/1
2	200	.	A	G	100	PASS	.	GT	0/0	0/1	0/0
2	201	.	A	G	100	PASS	.	GT	0/0	0/1	0/1
2	202	.	A	G	100	PASS	.	GT	0/0	0/1	1/1
3	300	.	A	G	100	PASS	.	GT	0/0	1/1	0/0
3	301	.	A	G	100	PASS	.	GT	0/0	1/1	0/1
3	302	.	A	G	100	PASS	.	GT	0/0	1/1	1/1
4	400	.	A	G	100	PASS	.	GT	0/1	0/0	0/0
4	401	.	A	G	100	PASS	.	GT	0/1	0/0	0/1
4	402	.	A	G	100	PASS	.	GT	0/1	0/0	1/1
5	500	.	A	G	100	PASS	.	GT	0/1	0/1	0/0
5	501	.	A	G	100	PASS	.	GT	0/1	0/1	0/1
5	502	.	A	G	100	PASS	.	GT	0/1	0/1	1/1
6	600	.	A	G	100	PASS	.	GT	0/1	1/1	0/0
6	601	.	A	G	100	PASS	.	GT	0/1	1/1	0/1
6	602	.	A	G	100	PASS	.	GT	0/1	1/1	1/1
X	100	.	A	G	100	PASS	.	GT	0/0	1	0
X	101	.	A	G	100	PASS	.	GT	0/0	1	1
X	102	.	A	G	100	PASS	.	GT	0/0	1	0/1
X	103	.	A	G	100	PASS	.	GT	0/0	0	0/1
X	104	.	A	G	100	PASS	.	GT	.	0	1
X	105	.	A	G	100	PASS	.	GT	.	0	0/1
Y	101	.	A	G	100	PASS	.	GT	.	0	0
Y	102	.	A	G	100	PASS	.	GT	.	0	1
Y	103	.	A	G	100	PASS	.	GT	.	0	.