1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
|
##fileformat=VCFv4.3
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype Likelihoods">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihoods">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic Depths">
##FORMAT=<ID=DF,Number=R,Type=Float,Description="Dummy">
##FORMAT=<ID=DD,Number=A,Type=Integer,Description="Dummy">
##contig=<ID=1,assembly=b37,length=249250621>
##reference=ref.fa
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A
1 30000 . C T . . . GT:PL:GL:AD:DF:DD 0/1:20,0,20:20,0,20:1,2:0.1,0.2:1
1 30001 . C CA . . . GT:PL:GL:AD:DF:DD 0/1:10,0,10:10,0,10:1,2:0.1,0.2:1
1 30002 . C CA,CAA . . . GT:PL:GL:AD:DF:DD 1/2:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2
1 30003 . C CA,CAA,CAAA . . . GT:PL:GL:AD:DF:DD 1/2:20,20,20,10,0,10,20,20,10,20:20,20,20,10,0,10,20,20,10,20:0,1,2,1:0,0.1,0.2,0.1:1,2,3
|
