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##fileformat=VCFv4.3
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype Likelihoods">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihoods">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic Depths">
##FORMAT=<ID=DF,Number=R,Type=Float,Description="Dummy">
##FORMAT=<ID=DD,Number=A,Type=Integer,Description="Dummy">
##contig=<ID=1,assembly=b37,length=249250621>
##reference=ref.fa
##FORMAT=<ID=LAA,Number=.,Type=Integer,Description="Localized alleles: subset of alternate alleles relevant for each sample">
##FORMAT=<ID=LPL,Number=.,Type=Integer,Description="Localized field: Genotype Likelihoods">
##FORMAT=<ID=LGL,Number=.,Type=Float,Description="Localized field: Genotype Likelihoods">
##FORMAT=<ID=LAD,Number=.,Type=Integer,Description="Localized field: Allelic Depths">
##FORMAT=<ID=LDF,Number=.,Type=Float,Description="Localized field: Dummy">
##FORMAT=<ID=LDD,Number=.,Type=Integer,Description="Localized field: Dummy">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A 2:A 3:A
1 30000 . C T . . . GT:PL:GL:AD:DF:DD 0/1:20,0,20:20,0,20:1,2:0.1,0.2:1 0/1:20,0,20:20,0,20:1,2:0.1,0.2:1 0/1:20,0,20:20,0,20:1,2:0.1,0.2:1
1 30001 . C CA,CC,CG . . . GT:PL:GL:AD:DF:DD 0/1:10,0,10,.,.,.,.,.,.,.:10,0,10,.,.,.,.,.,.,.:1,2,.,.:0.1,0.2,.,.:1,.,. 0/2:10,.,.,0,.,10,.,.,.,.:10,.,.,0,.,10,.,.,.,.:1,.,2,.:0.1,.,0.2,.:.,1,. 0/3:10,.,.,.,.,.,0,.,.,10:10,.,.,.,.,.,0,.,.,10:1,.,.,2:0.1,.,.,0.2:.,.,1
1 30002 . C CA,CAA,CC,CCC,CG,CGG . . . GT:LPL:LGL:LAD:LDF:LDD:LAA 1/2:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2:1,2 3/4:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2:3,4 5/6:20,20,20,10,0,10:20,20,20,10,0,10:0,1,2:0,0.1,0.2:1,2:5,6
1 30003 . C CA,CAA,CAAA . . . GT:PL:GL:AD:DF:DD 1/2:20,20,20,10,0,10,20,20,10,20:20,20,20,10,0,10,20,20,10,20:0,1,2,1:0,0.1,0.2,0.1:1,2,3 ./.:.:.:.:.:. ./.:.:.:.:.:.
1 30004 . C CC,CCC,CCCC . . . GT:PL:GL:AD:DF:DD ./.:.:.:.:.:. 1/2:20,20,20,10,0,10,20,20,10,20:20,20,20,10,0,10,20,20,10,20:0,1,2,1:0,0.1,0.2,0.1:1,2,3 ./.:.:.:.:.:.
1 30005 . C CG,CGG,CGGG . . . GT:PL:GL:AD:DF:DD ./.:.:.:.:.:. ./.:.:.:.:.:. 1/2:20,20,20,10,0,10,20,20,10,20:20,20,20,10,0,10,20,20,10,20:0,1,2,1:0,0.1,0.2,0.1:1,2,3
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