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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##samtoolsVersion=1.1-19-g6b249e2+htslib-1.1-74-g845c515
##samtoolsCommand=samtools mpileup -uvDV -b xxx//mpileup.bam.list -f xxx//mpileup.ref.fa.gz
##reference=file://xxx//mpileup.ref.fa.gz
##contig=<ID=17,length=81195210>
##ALT=<ID=X,Description="Represents allele(s) other than observed.">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=IDV,Number=1,Type=Integer,Description="Maximum number of reads supporting an indel">
##INFO=<ID=IMF,Number=1,Type=Float,Description="Maximum fraction of reads supporting an indel">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias for filtering splice-site artefacts in RNA-seq data (bigger is better)",Version="3">
##INFO=<ID=RPB,Number=1,Type=Float,Description="Mann-Whitney U test of Read Position Bias (bigger is better)">
##INFO=<ID=MQB,Number=1,Type=Float,Description="Mann-Whitney U test of Mapping Quality Bias (bigger is better)">
##INFO=<ID=BQB,Number=1,Type=Float,Description="Mann-Whitney U test of Base Quality Bias (bigger is better)">
##INFO=<ID=MQSB,Number=1,Type=Float,Description="Mann-Whitney U test of Mapping Quality vs Strand Bias (bigger is better)">
##INFO=<ID=SGB,Number=1,Type=Float,Description="Segregation based metric.">
##INFO=<ID=MQ0F,Number=1,Type=Float,Description="Fraction of MQ0 reads (smaller is better)">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Number of high-quality bases">
##FORMAT=<ID=DV,Number=1,Type=Integer,Description="Number of high-quality non-reference bases">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="Number of high-quality ref-forward , ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=MQ,Number=1,Type=Integer,Description="Average mapping quality">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00100 HG00101 HG00102
17 1 . A G,T . . DP=11;MQ0F=0;AC=0,0;AN=0;DP4=11,0,0,0;MQ=29 GT:PL:DP:DV ./.:0,0,0,0,0,0:5:0 ./.:.:3:0 ./.:.:3:0
17 2 . A T,G . . DP=11;MQ0F=0;AC=0,0;AN=0;DP4=11,0,0,0;MQ=29 GT:PL:DP:DV ./.:0,0,0,0,0,0:5:0 ./.:.:3:0 ./.:.:3:0
17 3 . A C . . DP=11;MQ0F=0;AC=0;AN=0;DP4=11,0,0,0;MQ=29 GT:PL:DP:DV ./.:0,0,0:5:0 ./.:.:3:0 ./.:.:3:0
17 4 . A G,T,C 21.815 . DP=11;MQ0F=0;AC=0,0,0;AN=2;DP4=11,0,0,0;MQ=29 GT:PL:DP:DV 0/0:1,2,3,7,8,10,11,12,14,15:5:0 ./.:.:3:0 ./.:.:3:0
17 5 . A G,T . . DP=11;MQ0F=0;AC=0,0;AN=0;DP4=11,0,0,0;MQ=29 GT:PL:DP:DV ./.:0,0,0,0,0,0:5:0 ./.:.:3:0 ./.:.:3:0
17 6 . A T,G . . DP=11;MQ0F=0;AC=0,0;AN=0;DP4=11,0,0,0;MQ=29 GT:PL:DP:DV ./.:0,0,0,0,0,0:5:0 ./.:.:3:0 ./.:.:3:0
17 7 . A T,G,C 21.5769 . DP=11;MQ0F=0;AC=0,0,0;AN=2;DP4=11,0,0,0;MQ=29 GT:PL:DP:DV 0/0:1,2,3,4,5,6,2,3,5,3:5:0 ./.:.:3:0 ./.:.:3:0
17 828 . T C 409.29 . DP=25;VDB=0.842082;SGB=-4.20907;RPB=0.950652;MQB=1;MQSB=1;BQB=0.929717;MQ0F=0;AC=4;AN=6;DP4=2,4,8,11;MQ=60 GT:PL:DP:DV 0/1:211,0,35:12:10 0/1:116,0,91:9:5 1/1:120,12,0:4:4
17 1665 . T C 3.10665 . DP=20;VDB=0.1;SGB=0.346553;RPB=0.222222;MQB=0.611111;MQSB=0.988166;BQB=0.944444;MQ0F=0;AC=1;AN=6;DP4=7,11,1,1;MQ=55 GT:PL:DP:DV 0/0:0,21,185:7:0 0/0:0,27,222:9:0 0/1:35,0,51:4:2
17 2220 . G C 188.992 . DP=21;VDB=0.532753;SGB=-3.51597;RPB=0.964198;MQB=0.898397;MQSB=0.875769;BQB=0.0354359;MQ0F=0;AC=0;AN=6;DP4=6,2,1,11;MQ=58 GT:PL:DP:DV 0/0:139,157,255:12:6 0/0:69,75,119:4:2 0/0:131,131,131:4:4
17 2564 . A AG 165.992 . DP=15;VDB=0.690812;SGB=-3.20711;RPB=0.197899;MQB=1;MQSB=1;BQB=0.965069;MQ0F=0;AC=0;AN=6;DP4=1,4,4,5;MQ=60 GT:PL:DP:DV 0/0:88,98,171:6:3 0/0:57,63,117:4:2 0/0:124,124,124:4:4
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