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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=17,length=4200>
##ALT=<ID=*,Description="Represents allele(s) other than observed.">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=IDV,Number=1,Type=Integer,Description="Maximum number of raw reads supporting an indel">
##INFO=<ID=IMF,Number=1,Type=Float,Description="Maximum fraction of raw reads supporting an indel">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias for filtering splice-site artefacts in RNA-seq data (bigger is better)",Version="3">
##INFO=<ID=RPBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Read Position Bias (closer to 0 is better)">
##INFO=<ID=MQBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Mapping Quality Bias (closer to 0 is better)">
##INFO=<ID=BQBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Base Quality Bias (closer to 0 is better)">
##INFO=<ID=MQSBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Mapping Quality vs Strand Bias (closer to 0 is better)">
##INFO=<ID=SCBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Soft-Clip Length Bias (closer to 0 is better)">
##INFO=<ID=SGB,Number=1,Type=Float,Description="Segregation based metric, http://samtools.github.io/bcftools/rd-SegBias.pdf">
##INFO=<ID=MQ0F,Number=1,Type=Float,Description="Fraction of MQ0 reads (smaller is better)">
##INFO=<ID=I16,Number=16,Type=Float,Description="Auxiliary tag used for calling, see description of bcf_callret1_t in bam2bcf.h">
##INFO=<ID=QS,Number=R,Type=Float,Description="Auxiliary tag used for calling">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00100
17 100 . C <*> 0 . DP=9;I16=9,0,0,0,350,14094,0,0,509,29641,0,0,159,3427,0,0;QS=1,0;MQ0F=0 PL 0,27,189
17 101 . C <*> 0 . DP=9;I16=9,0,0,0,331,12701,0,0,509,29641,0,0,159,3349,0,0;QS=1,0;MQ0F=0 PL 0,27,182
17 102 . C <*> 0 . DP=9;I16=9,0,0,0,349,13977,0,0,509,29641,0,0,159,3283,0,0;QS=1,0;MQ0F=0 PL 0,27,188
17 103 . T C,<*> 0 . DP=9;I16=8,0,1,0,338,14304,6,36,480,28800,29,841,153,3193,6,36;QS=0.982558,0.0174419,0;SGB=-0.379885;RPBZ=-0.774597;MQBZ=-2.82843;BQBZ=-1.62549;SCBZ=2.82843;MQ0F=0 PL 0,17,184,24,187,185
17 104 . G C,<*> 0 . DP=9;I16=8,0,1,0,310,12224,3,9,480,28800,29,841,152,3138,7,49;QS=0.987261,0.0127389,0;SGB=-0.379885;RPBZ=-0.774597;MQBZ=-2.82843;BQBZ=-1.56227;SCBZ=2.82843;MQ0F=0 PL 0,18,173,24,176,173
17 105 . G <*> 0 . DP=10;I16=10,0,0,0,318,11136,0,0,569,33241,0,0,159,3157,0,0;QS=1,0;MQ0F=0 PL 0,30,171
17 106 . G <*> 0 . DP=10;I16=10,0,0,0,372,14438,0,0,569,33241,0,0,160,3140,0,0;QS=1,0;MQ0F=0 PL 0,30,190
17 107 . C <*> 0 . DP=10;I16=10,0,0,0,372,14922,0,0,569,33241,0,0,161,3137,0,0;QS=1,0;MQ0F=0 PL 0,30,192
17 108 . C <*> 0 . DP=10;I16=10,0,0,0,367,14465,0,0,569,33241,0,0,162,3148,0,0;QS=1,0;MQ0F=0 PL 0,30,190
17 109 . T C,<*> 0 . DP=10;I16=9,0,1,0,367,15083,2,4,540,32400,29,841,151,3029,12,144;QS=0.989218,0.0107817,0;SGB=-0.379885;RPBZ=-0.522233;MQBZ=-3;BQBZ=-1.59099;SCBZ=3;MQ0F=0 PL 0,20,191,27,194,191
17 110 . G <*> 0 . DP=10;I16=10,0,0,0,376,15242,0,0,569,33241,0,0,164,3212,0,0;QS=1,0;MQ0F=0 PL 0,30,194
17 111 . G <*> 0 . DP=10;I16=10,0,0,0,316,10760,0,0,569,33241,0,0,165,3265,0,0;QS=1,0;MQ0F=0 PL 0,30,167
17 112 . C G,<*> 0 . DP=10;I16=9,0,1,0,362,14690,2,4,540,32400,29,841,151,3107,15,225;QS=0.989071,0.010929,0;SGB=-0.379885;RPBZ=-0.174078;MQBZ=-3;BQBZ=-1.61126;SCBZ=3;MQ0F=0 PL 0,20,187,27,190,187
17 113 . A G,<*> 0 . DP=10;I16=9,0,1,0,334,12490,4,16,540,32400,29,841,150,3106,16,256;QS=0.988166,0.0118343,0;SGB=-0.379885;RPBZ=-0.174078;MQBZ=-3;BQBZ=-1.57628;SCBZ=3;MQ0F=0 PL 0,20,172,27,175,172
17 114 . C <*> 0 . DP=10;I16=10,0,0,0,354,13490,0,0,569,33241,0,0,166,3404,0,0;QS=1,0;MQ0F=0 PL 0,30,181
17 115 . C <*> 0 . DP=10;I16=10,0,0,0,367,14165,0,0,569,33241,0,0,166,3458,0,0;QS=1,0;MQ0F=0 PL 0,30,189
17 116 . A C,<*> 0 . DP=10;I16=9,0,1,0,351,13723,2,4,540,32400,29,841,146,3114,19,361;QS=0.988732,0.0112676,0;SGB=-0.379885;RPBZ=0.174078;MQBZ=-3;BQBZ=-1.59099;SCBZ=3;MQ0F=0 PL 0,20,179,27,182,179
17 117 . G <*> 0 . DP=10;I16=10,0,0,0,359,13895,0,0,569,33241,0,0,164,3506,0,0;QS=1,0;MQ0F=0 PL 0,30,185
17 118 . G <*> 0 . DP=9;I16=9,0,0,0,317,11785,0,0,509,29641,0,0,164,3550,0,0;QS=1,0;MQ0F=0 PL 0,27,175
17 119 . G <*> 0 . DP=9;I16=9,0,0,0,320,12116,0,0,509,29641,0,0,164,3606,0,0;QS=1,0;MQ0F=0 PL 0,27,176
17 120 . A G,<*> 0 . DP=9;I16=8,0,1,0,311,12135,4,16,480,28800,29,841,141,3145,23,529;QS=0.987302,0.0126984,0;SGB=-0.379885;RPBZ=0.387298;MQBZ=-2.82843;BQBZ=-1.55569;SCBZ=2.82843;MQ0F=0 PL 0,18,171,24,174,171
17 121 . G <*> 0 . DP=9;I16=9,0,0,0,327,12691,0,0,509,29641,0,0,163,3703,0,0;QS=1,0;MQ0F=0 PL 0,27,181
17 122 . C <*> 0 . DP=9;I16=9,0,0,0,324,12880,0,0,509,29641,0,0,162,3742,0,0;QS=1,0;MQ0F=0 PL 0,27,180
17 123 . T <*> 0 . DP=8;I16=8,0,0,0,288,11074,0,0,449,26041,0,0,161,3739,0,0;QS=1,0;MQ0F=0 PL 0,24,170
17 124 . T <*> 0 . DP=9;I16=9,0,0,0,276,9034,0,0,509,29641,0,0,160,3742,0,0;QS=1,0;MQ0F=0 PL 0,27,154
17 125 . A T,<*> 0 . DP=8;I16=7,0,1,0,253,9195,4,16,420,25200,29,841,136,3126,25,625;QS=0.984436,0.0155642,0;SGB=-0.379885;RPBZ=1.09109;MQBZ=-2.64575;BQBZ=-1.5367;SCBZ=2.64575;MQ0F=0 PL 0,15,149,21,152,149
17 126 . A <*> 0 . DP=8;I16=8,0,0,0,275,9967,0,0,449,26041,0,0,162,3766,0,0;QS=1,0;MQ0F=0 PL 0,24,162
17 127 . C <*> 0 . DP=8;I16=8,0,0,0,280,10340,0,0,449,26041,0,0,163,3787,0,0;QS=1,0;MQ0F=0 PL 0,24,163
17 128 . A <*> 0 . DP=8;I16=8,0,0,0,295,11123,0,0,449,26041,0,0,164,3814,0,0;QS=1,0;MQ0F=0 PL 0,24,169
17 129 . A <*> 0 . DP=8;I16=8,0,0,0,291,10845,0,0,449,26041,0,0,165,3847,0,0;QS=1,0;MQ0F=0 PL 0,24,168
17 130 . A <*> 0 . DP=8;I16=8,0,0,0,292,10932,0,0,449,26041,0,0,166,3886,0,0;QS=1,0;MQ0F=0 PL 0,24,169
17 131 . C <*> 0 . DP=7;I16=7,0,0,0,276,10910,0,0,420,25200,0,0,141,3255,0,0;QS=1,0;MQ0F=0 PL 0,21,167
17 132 . A <*> 0 . DP=7;I16=7,0,0,0,279,11147,0,0,420,25200,0,0,141,3253,0,0;QS=1,0;MQ0F=0 PL 0,21,169
17 133 . T <*> 0 . DP=7;I16=7,0,0,0,269,10365,0,0,420,25200,0,0,141,3255,0,0;QS=1,0;MQ0F=0 PL 0,21,163
17 134 . C <*> 0 . DP=7;I16=7,0,0,0,293,12279,0,0,420,25200,0,0,141,3261,0,0;QS=1,0;MQ0F=0 PL 0,21,177
17 135 . T <*> 0 . DP=7;I16=7,0,0,0,286,11708,0,0,420,25200,0,0,141,3271,0,0;QS=1,0;MQ0F=0 PL 0,21,173
17 136 . G <*> 0 . DP=7;I16=7,0,0,0,283,11471,0,0,420,25200,0,0,141,3285,0,0;QS=1,0;MQ0F=0 PL 0,21,172
17 137 . T <*> 0 . DP=7;I16=7,0,0,0,263,9933,0,0,420,25200,0,0,141,3303,0,0;QS=1,0;MQ0F=0 PL 0,21,160
17 138 . C <*> 0 . DP=7;I16=7,0,0,0,284,11546,0,0,420,25200,0,0,141,3325,0,0;QS=1,0;MQ0F=0 PL 0,21,172
17 139 . C <*> 0 . DP=7;I16=7,0,0,0,263,9957,0,0,420,25200,0,0,140,3302,0,0;QS=1,0;MQ0F=0 PL 0,21,161
17 140 . A <*> 0 . DP=7;I16=7,0,0,0,269,10379,0,0,420,25200,0,0,139,3285,0,0;QS=1,0;MQ0F=0 PL 0,21,163
17 141 . G <*> 0 . DP=6;I16=6,0,0,0,239,9599,0,0,360,21600,0,0,139,3273,0,0;QS=1,0;MQ0F=0 PL 0,18,158
17 142 . C <*> 0 . DP=6;I16=6,0,0,0,239,9557,0,0,360,21600,0,0,139,3265,0,0;QS=1,0;MQ0F=0 PL 0,18,157
17 143 . G <*> 0 . DP=6;I16=6,0,0,0,197,6487,0,0,360,21600,0,0,139,3261,0,0;QS=1,0;MQ0F=0 PL 0,18,128
17 144 . A <*> 0 . DP=6;I16=6,0,0,0,232,9020,0,0,360,21600,0,0,138,3212,0,0;QS=1,0;MQ0F=0 PL 0,18,152
17 145 . A <*> 0 . DP=6;I16=6,0,0,0,233,9089,0,0,360,21600,0,0,137,3169,0,0;QS=1,0;MQ0F=0 PL 0,18,153
17 146 . T <*> 0 . DP=6;I16=6,0,0,0,233,9065,0,0,360,21600,0,0,136,3132,0,0;QS=1,0;MQ0F=0 PL 0,18,152
17 147 . A <*> 0 . DP=6;I16=6,0,0,0,229,8771,0,0,360,21600,0,0,135,3101,0,0;QS=1,0;MQ0F=0 PL 0,18,150
17 148 . C <*> 0 . DP=6;I16=6,0,0,0,240,9618,0,0,360,21600,0,0,134,3076,0,0;QS=1,0;MQ0F=0 PL 0,18,157
17 149 . C <*> 0 . DP=6;I16=6,0,0,0,219,8419,0,0,360,21600,0,0,133,3057,0,0;QS=1,0;MQ0F=0 PL 0,18,148
17 150 . T <*> 0 . DP=6;I16=6,0,0,0,234,9158,0,0,360,21600,0,0,131,2993,0,0;QS=1,0;MQ0F=0 PL 0,18,153
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