File: split-vep.20.out

package info (click to toggle)
bcftools 1.22-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 22,792 kB
  • sloc: ansic: 72,978; perl: 7,583; sh: 694; python: 595; makefile: 301
file content (1 line) | stat: -rw-r--r-- 1,573 bytes parent folder | download | duplicates (3) 
1
 
chr1	817186	.	G	A	50	PASS	ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|Transcript|ENST00000326734|lncRNA||||||||||rs3094315|185|1||SNV|HGNC|HGNC:32236|YES||2||||||||||||||0.3873|0.804|0.8839|0.84|0.8088||||||||||||0.8839|EAS||||21159730&21492446&23664118&19096721|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|AL669831.4|ENSG00000230092|Transcript|ENST00000447500|processed_transcript||1/4|ENST00000447500.4:n.340+187C>T|||||||rs3094315||-1||SNV|Clone_based_ensembl_gene||YES||5||||||||||||||0.3873|0.804|0.8839|0.84|0.8088||||||||||||0.8839|EAS||||21159730&21492446&23664118&19096721|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|AL669831.3|ENSG00000230021|Transcript|ENST00000634337|processed_transcript||1/4|ENST00000634337.2:n.127+10484C>T|||||||rs3094315||-1||SNV|Clone_based_ensembl_gene||||5||||||||||||||0.3873|0.804|0.8839|0.84|0.8088||||||||||||0.8839|EAS||||21159730&21492446&23664118&19096721|||||,A|intron_variant&non_coding_transcript_variant|MODIFIER|AL669831.3|ENSG00000230021|Transcript|ENST00000635509|processed_transcript||1/3|ENST00000635509.2:n.100+10484C>T|||||||rs3094315||-1||SNV|Clone_based_ensembl_gene||||5||||||||||||||0.3873|0.804|0.8839|0.84|0.8088||||||||||||0.8839|EAS||||21159730&21492446&23664118&19096721|||||,A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000000085|promoter||||||||||rs3094315||||SNV|||||||||||||||||||0.3873|0.804|0.8839|0.84|0.8088||||||||||||0.8839|EAS||||21159730&21492446&23664118&19096721|||||;IMPACT=MODIFIER,MODIFIER,MODIFIER,MODIFIER,MODIFIER	GT	1|1