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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=LAD,Number=.,Type=Integer,Description="Localized field: Allelic Depths">
##FORMAT=<ID=LPL,Number=.,Type=Integer,Description="Local normalized, Phred-scaled likelihoods for genotypes as in original gVCF (without allele reordering)">
##FORMAT=<ID=LAA,Number=.,Type=Integer,Description="Mapping of alt allele index from original gVCF to msVCF, comma-separated, 1-based (each value is the allele index in the msVCF)">
##contig=<ID=chr,length=123456>
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled genotype likelihoods">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT smpl1 smpl2
chr 1 . A C,G . . . GT:LAD:LPL:LAA:AD:PL 0/0:31:0:.:31,.,.:0,.,.,.,.,. 0/1:17,16:86,0,57:1:17,16,.:86,0,57,.,.,.
chr 2 . G A,T . . . GT:LAD:LPL:LAA:AD:PL 0/2:13,12:82,0,55:2:13,.,12:82,.,.,0,.,55 0/0:34:0:.:34,.,.:0,.,.,.,.,.
chr 3 . T G . . . GT:LAD:LPL:LAA:AD:PL 0/0:29:0:.:29,.:0,.,. 0/1:13,8:81,0,53:1:13,8:81,0,53
chr 4 . A C . . . GT:LAD:LPL:LAA:AD:PL 1/1:0,27:88,61,0:1:0,27:88,61,0 0/1:18,19:85,0,52:1:18,19:85,0,52
chr 5 . T TA,TAA,TAAA,TAAAA,TAAAAA,TAAAAAA,TAAAAAAA . . . GT:LAD:LPL:LAA:AD:PL 5/2:0,8,13:305,339,82,220,0,61:5,2:0,.,13,.,.,8,.,.:305,.,.,220,.,61,.,.,0,.,.,.,.,.,.,339,.,.,.,.,82,.,.,.,.,.,.,.,.,.,.,.,.,.,.,. 2/2:0,25:90,56,0:2:0,.,25,.,.,.,.,.:90,.,.,56,.,0,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.
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