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##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="All filters passed">
##reference=file:///seq/references/1000Genomes-NCBI37.fasta
##contig=<ID=11,length=135006516>
##contig=<ID=20,length=63025520>
##contig=<ID=X,length=155270560>
##contig=<ID=Y,length=59373566>
##FORMAT=<ID=GL,Number=G,Type=Float,Description="List of Phred-scaled genotype likelihoods">
##FILTER=<ID=StrandBias,Description="Min P-value for strand bias (INFO/PV4) [0.0001]">
##FILTER=<ID=BaseQualBias,Description="Min P-value for baseQ bias (INFO/PV4) [1e-100]">
##FILTER=<ID=MapQualBias,Description="Min P-value for mapQ bias (INFO/PV4) [0]">
##FILTER=<ID=EndDistBias,Description="Min P-value for end distance bias (INFO/PV4) [0.0001]">
##FILTER=<ID=MinAB,Description="Minimum number of alternate bases (INFO/DP4) [2]">
##FORMAT=<ID=GP,Number=G,Type=Float,Description="Genotype probabilities">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003
11 2343543 . A . 999 PASS . GL:GP 0:1 0:1 0:1
11 5464562 . C T 999 PASS . GL:GP 0,0,0:0.333333,0.333333,0.333333 0,0,0:0.333333,0.333333,0.333333 0,0,0:0.333333,0.333333,0.333333
20 76962 rs6111385 T C 999 PASS . GL:GP -25.5,0,-25.5:3.16228e-26,1,3.16228e-26 -25.5,-25.5,0:3.16228e-26,3.16228e-26,1 -25.5,-25.5,0:3.16228e-26,3.16228e-26,1
20 126310 . ACC A 999 StrandBias;EndDistBias . GL:GP -25.5,0,-13.2:3.16228e-26,1,6.30958e-14 -25.5,0,-13.9:3.16228e-26,1,1.25893e-14 -25.5,-21.3,0:3.16228e-26,5.01188e-22,1
20 138125 rs2298108 G T 999 PASS . GL:GP -13.5,0,-16.3:3.16228e-14,1,5.01188e-17 -14,0,-25.5:1e-14,1,3.16228e-26 -25.5,-19.9,0:3.16228e-26,1.25893e-20,1
20 138148 rs2298109 C T 999 PASS . GL:GP -19.5,0,-25.5:3.16228e-20,1,3.16228e-26 -19.2,0,-25.5:6.30956e-20,1,3.16228e-26 -25.5,-23.5,0:3.16228e-26,3.16228e-24,1
20 271225 . T TTTA,TA 999 StrandBias . GL:GP -15.1,-5.3,-20.3,0,-5.2,-15.9:7.94319e-16,5.01181e-06,5.01182e-21,0.999989,6.3095e-06,1.25891e-16 -25.5,0,-21.3,-25.5,-25.5,-25.5:3.16228e-26,1,5.01188e-22,3.16228e-26,3.16228e-26,3.16228e-26 -25.5,-25.5,-25.5,-25.5,0,-24.1:3.16228e-26,3.16228e-26,3.16228e-26,3.16228e-26,1,7.94328e-25
20 304568 . C T 999 PASS . GL:GP -9.5,0,-25.5:3.16228e-10,1,3.16228e-26 -19.2,0,-25.5:6.30956e-20,1,3.16228e-26 -25.5,-9.5,0:3.16228e-26,3.16228e-10,1
20 326891 . A AC 999 PASS . GL:GP -25.5,0,-13.2:3.16228e-26,1,6.30958e-14 -25.5,0,-13.9:3.16228e-26,1,1.25893e-14 .,.,.:.,.,.
X 2928329 rs62584840 C T 999 PASS . GL:GP 0,-5.6:0.999997,2.51188e-06 0,-8.1:1,7.94328e-09 -7.3,0,-1.9:4.94956e-08,0.987567,0.0124327
X 2933066 rs61746890 G C 999 PASS . GL:GP 0,-25.5:1,3.16228e-26 0,-25.5:1,3.16228e-26 -25.5,-25.5,-25.5:0.333333,0.333333,0.333333
X 2942109 rs5939407 T C 999 PASS . GL:GP 0,-25.5:1,3.16228e-26 -25.5,0:3.16228e-26,1 -25.5,-15.7,0:3.16228e-26,1.99526e-16,1
X 3048719 . T C 999 PASS . GL:GP 0,-25.5:1,3.16228e-26 -25.5,0:3.16228e-26,1 -25.5,0,-15.7:3.16228e-26,1,1.99526e-16
Y 8657215 . C A 999 PASS . GL:GP 0,-25.5:1,3.16228e-26 -25.5,0:3.16228e-26,1 .:.
Y 10011673 rs78249411 G A 999 MinAB . GL:GP -12.6,-10.1:0.00315231,0.996848 -9.5,0:3.16228e-10,1 .:.
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