1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
|
# This file can be used as input to the subset plotting tools at:
# https://github.com/dlaehnemann/bankers2
# Genotype intersections across samples:
@SMPS NA00003 NA00002 NA00001
# Human readable output (-H) was requested. Subset intersection counts are therefore sorted by
# sample and repeated for each contained sample. For each sample, counts are in banker's
# sequence order regarding all other samples.
# [1] Number of shared non-ref genotypes [2] Samples sharing non-ref genotype (GT)
9 NA00003
1 NA00003,NA00002
0 NA00003,NA00001
1 NA00003,NA00002,NA00001
4 NA00002
1 NA00002,NA00003
8 NA00002,NA00001
1 NA00002,NA00003,NA00001
5 NA00001
0 NA00001,NA00003
8 NA00001,NA00002
1 NA00001,NA00003,NA00002
|
