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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=STR,Number=A,Type=String,Description="Testing string and Number=A in INFO">
##INFO=<ID=TXT,Number=.,Type=String,Description="Testing in INFO">
##INFO=<ID=XRF,Number=R,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XAF,Number=A,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XGF,Number=G,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XRI,Number=R,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XAI,Number=A,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XGI,Number=G,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XRS,Number=R,Type=String,Description="Test Number=AGR in INFO">
##INFO=<ID=XAS,Number=A,Type=String,Description="Test Number=AGR in INFO">
##INFO=<ID=XGS,Number=G,Type=String,Description="Test Number=AGR in INFO">
##SAMPLE=<ID=NORMAL,SampleName=B,Description="Less-than (\"<\") and greater-than (\">\") quoting nonsense where double brackets would do just fine",softwareName=<Nonsense,Software>,softwareVer=<119,65>,softwareParam=<.>,MetadataResource=http://somewhere.com/path>
##INFO=<ID=CIGAR,Number=A,Type=String,Description="test">
##INFO=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observations, with partial observations recorded fractionally">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=FGS,Number=G,Type=String,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FGI,Number=G,Type=Integer,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FGF,Number=G,Type=Float,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FAS,Number=A,Type=String,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FAI,Number=A,Type=Integer,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FAF,Number=A,Type=Float,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FRS,Number=R,Type=String,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FRI,Number=R,Type=Integer,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FRF,Number=R,Type=Float,Description="Test Number=AGR in FORMAT">
##FILTER=<ID=q20,Description="Mapping quality below 20">
##contig=<ID=1,assembly=b37,length=249250621>
##contig=<ID=2,assembly=b37,length=243199373>
##contig=<ID=3,assembly=b37,length=198022430>
##contig=<ID=4,assembly=b37,length=191154276>
##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=IA8,Number=.,Type=Integer,Description="test">
##INFO=<ID=IA16,Number=.,Type=Integer,Description="test">
##INFO=<ID=IA32,Number=.,Type=Integer,Description="test">
##INFO=<ID=IAF,Number=.,Type=Float,Description="test">
##INFO=<ID=I8,Number=1,Type=Integer,Description="test">
##INFO=<ID=I16,Number=1,Type=Integer,Description="test">
##INFO=<ID=I32,Number=1,Type=Integer,Description="test">
##INFO=<ID=IF,Number=1,Type=Float,Description="test">
##FORMAT=<ID=F8,Number=1,Type=Integer,Description="test">
##FORMAT=<ID=F16,Number=1,Type=Integer,Description="test">
##FORMAT=<ID=F32,Number=1,Type=Integer,Description="test">
##FORMAT=<ID=FF,Number=1,Type=Float,Description="test">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT B
1 3162006 . GAA GA 238 PASS DP=19;AN=2;AC=1;XRF=1e+06,3e+06;XRI=1111,3333;XRS=ABC,GHI;XAF=2e+06;XAI=2222;XAS=DEF;XGF=1e+06,4e+06,6e+06;XGI=11,44,66;XGS=ABC,JKL,PQR;TXT=ABC,DEF,GHI GT:GQ:DP 0/1:1:1
1 3162007 . TAGGG CAGGT 238 PASS AO=113;CIGAR=1X3M1X;AC=1;AN=1 GT:FGS:FGI:FGF:FAS:FAI:FAF:FRS:FRI:FRF 1:AAAAAA,C:1,3:0.1,0.003:B:2:0.02:A,CCC:1,3:0.1,0.003
1 3162008 . TAGGG CAGGT 238 PASS IA8=10,.;IA16=1000,.;IA32=100000,.;IAF=0.003,.;CIGAR=1X3M1X;AC=1;AN=1 GT:F8:F16:F32:FF 1:.:.:.:.
1 3162009 . TAGGG CAGGT 238 PASS IA8=.;IA16=.;IA32=.;IAF=.;CIGAR=1X3M1X;AC=1;AN=1 GT:F8:F16:F32:FF 1:.:.:.:.
1 3162010 . TAGGG CAGGT 238 PASS I8=.;I16=.;I32=.;IF=.;CIGAR=1X3M1X;AC=1;AN=1 GT:F8:F16:F32:FF 1:.:.:.:.
|
